Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_30

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_29: 8397 - HMMPfam-Swi5-PF07061, at 74095 to 74821 8397 mRNA_30: 8398 - KOG2798 Putative trehalase, at 75069 to 76780 8398 mRNA_31: 8399 - K01520 dut, DUT dUTP pyrophosphatase, at 76865 to 77832 8399

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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74,251 - 8397 mRNA_29 0.21 -0.3
74,281 + 8397 mRNA_29 0.26 -0.9
74,285 - 8397 mRNA_29 0.26 0.4
74,296 + 8397 mRNA_29 0.28 -0.9
74,309 + 8397 mRNA_29 0.29 -3.0
74,320 - 8397 mRNA_29 0.31 -0.2
74,326 + 8397 mRNA_29 0.32 -0.4
74,586 + 8397 mRNA_29 0.68 0.2
74,735 - 8397 mRNA_29 0.88 -1.3
74,756 + -2.5
75,229 - -1.4
75,360 - 8398 mRNA_30 0.17 -3.3
75,482 - 8398 mRNA_30 0.24 -1.9
75,957 - 8398 mRNA_30 0.52 -1.8
76,059 - 8398 mRNA_30 0.58 -1.5
76,215 + 8398 mRNA_30 0.67 -0.7
76,286 - 8398 mRNA_30 0.71 -2.2
76,460 - 8398 mRNA_30 0.81 -0.6
76,462 + 8398 mRNA_30 0.81 -1.2
76,521 - 8398 mRNA_30 0.85 -0.8
76,540 + 8398 mRNA_30 0.86 -1.9
76,598 - 8398 mRNA_30 0.89 0.7
76,799 - -4.0
76,813 + -0.7
76,921 + -1.9
76,931 + 0.2
76,952 - -0.6