Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_28

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_27: 8395 - K00088 IMPDH, guaB IMP dehydrogenase, at 70303 to 72461 8395 mRNA_28: 8396 - Hypothetical Protein, at 72914 to 73928 8396 mRNA_29: 8397 - HMMPfam-Swi5-PF07061, at 74095 to 74821 8397

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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72,795 - -2.5
72,811 - -2.5
72,924 - -1.3
73,108 - 8396 mRNA_28 0.19 -1.0
73,204 + 8396 mRNA_28 0.29 -0.9
73,217 + 8396 mRNA_28 0.30 -0.5
73,300 + 8396 mRNA_28 0.38 0.3
73,401 - 8396 mRNA_28 0.48 -0.3
73,569 - 8396 mRNA_28 0.65 -2.8
73,849 + -2.3
73,998 - -2.2
74,006 - -2.0
74,251 - 8397 mRNA_29 0.21 -0.3
74,281 + 8397 mRNA_29 0.26 -0.9
74,285 - 8397 mRNA_29 0.26 0.4
74,296 + 8397 mRNA_29 0.28 -0.9
74,309 + 8397 mRNA_29 0.29 -3.0
74,320 - 8397 mRNA_29 0.31 -0.2
74,326 + 8397 mRNA_29 0.32 -0.4
74,586 + 8397 mRNA_29 0.68 0.2
74,735 - 8397 mRNA_29 0.88 -1.3
74,756 + -2.5