Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_19

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_18: 8386 - KOG1515 Arylacetamide deacetylase, at 50473 to 51921 8386 mRNA_19: 8387 - KOG1399 Flavin-containing monooxygenase, at 52301 to 54654 8387 mRNA_20: 8388 - KOG0519 Sensory transduction histidine kinase, at 55031 to 59299 8388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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51,432 - 8386 mRNA_18 0.66 -1.4
51,550 + 8386 mRNA_18 0.74 -2.9
51,561 - 8386 mRNA_18 0.75 -1.5
51,562 + 8386 mRNA_18 0.75 -4.9
51,654 + 8386 mRNA_18 0.82 -0.5
51,655 - 8386 mRNA_18 0.82 -1.9
51,845 - -3.8
51,845 + -3.3
51,846 + -0.8
51,962 - -1.3
52,120 + -1.1
52,128 - -0.7
52,132 - -0.2
52,157 + -0.3
52,815 + 8387 mRNA_19 0.22 -0.7
52,819 - 8387 mRNA_19 0.22 -0.2
52,852 - 8387 mRNA_19 0.23 -2.1
52,876 - 8387 mRNA_19 0.24 -0.5
52,889 - 8387 mRNA_19 0.25 -1.6
52,897 + 8387 mRNA_19 0.25 -1.2
52,952 - 8387 mRNA_19 0.28 -0.5
52,970 + 8387 mRNA_19 0.28 0.2
53,847 + 8387 mRNA_19 0.66 1.1
53,892 - 8387 mRNA_19 0.68 -1.1
53,900 + 8387 mRNA_19 0.68 -0.7
53,910 + 8387 mRNA_19 0.68 -1.8
53,912 - 8387 mRNA_19 0.68 -1.3
54,110 + 8387 mRNA_19 0.77 -1.5
54,165 - 8387 mRNA_19 0.79 -1.9
54,210 + 8387 mRNA_19 0.81 -1.8
54,466 + -2.9
54,566 + -0.7
54,569 - -0.6
54,595 - -3.0
54,602 - -2.8
54,605 + -1.8
54,629 + -2.2
54,751 - -0.2
54,754 - -2.4
54,754 - -2.5
54,758 - -1.3
54,760 + -1.9
54,761 + -2.2
54,765 - 0.7
54,767 + -2.7
54,768 - -2.6
54,776 - -0.2
54,777 + -0.7
54,777 + -3.3
54,782 + -2.3
54,787 + -0.8
54,913 - -0.6
54,917 - -3.1
54,947 + -0.2
54,947 + -2.9
54,952 - 0.2
55,100 + -0.8
55,379 - -1.7
55,383 + -4.1