Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_12

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_11: 8379 - Hypothetical Protein, at 31186 to 32050 8379 mRNA_12: 8380 - K12757 MYL12 myosin regulatory light chain 12, at 32509 to 33351 8380 mRNA_13: 8381 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 33714 to 35045 8381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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31,671 - 8379 mRNA_11 0.56 -3.2
31,700 - 8379 mRNA_11 0.59 -2.6
31,707 + 8379 mRNA_11 0.60 -0.7
31,773 - 8379 mRNA_11 0.68 -1.0
32,006 + 0.2
32,281 + -0.1
32,391 - 1.3
32,394 - -0.8
32,405 - -1.8
32,550 - -2.6
32,551 + -3.4
32,552 - -2.7
32,556 + 0.2
32,558 - -1.1
32,565 - -1.2
32,575 + -0.1
32,579 + -0.1
32,588 - -0.2
32,596 - 8380 mRNA_12 0.10 -0.9
32,719 + 8380 mRNA_12 0.25 1.0
32,723 - 8380 mRNA_12 0.25 -2.3
32,952 + 8380 mRNA_12 0.53 -2.8
32,975 + 8380 mRNA_12 0.55 -0.2
33,006 + 8380 mRNA_12 0.59 -1.9
33,354 + -1.1
33,828 - -2.2
33,901 + 8381 mRNA_13 0.14 -0.8
34,328 - 8381 mRNA_13 0.46 0.3