Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371 mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372 mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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9,290 + 8371 mRNA_3 0.61 -2.1
9,293 - 8371 mRNA_3 0.61 -2.8
9,293 - 8371 mRNA_3 0.61 -1.2
9,321 + 8371 mRNA_3 0.62 -2.9
9,595 - 8371 mRNA_3 0.77 0.7
9,699 + 8371 mRNA_3 0.83 -1.6
9,699 + 8371 mRNA_3 0.83 0.8
9,864 - -2.2
9,885 + -2.5
9,887 - -0.0
9,889 + -0.0
9,890 - 0.0
9,920 + -1.0
9,921 + 0.4
9,946 - 0.4
9,986 + -2.4
9,998 - -3.1
10,003 - -2.6
10,039 - -0.6
10,045 - -3.3
10,059 + -0.1
10,066 + -1.0
10,067 + -1.0
10,071 + -3.0
10,074 - 0.3
10,076 - -4.6
10,095 + -1.1
10,120 + -1.3
10,123 + -1.6
10,197 + -0.7
10,214 + 0.0
10,229 + -0.9
10,230 - -1.8
10,241 + -1.1
10,241 + -1.2
10,357 - -3.6
10,521 - 8372 mRNA_4 0.18 -0.5
10,663 + 8372 mRNA_4 0.27 -2.1
10,915 - 8372 mRNA_4 0.43 -0.4
11,415 - 8372 mRNA_4 0.74 -1.8
11,519 - 8372 mRNA_4 0.80 -2.7
11,848 + -2.8
11,850 - -0.5
11,972 + -0.7
12,045 + -0.5
12,157 + -1.3
12,167 - 1.6
12,186 - -0.5
12,190 + -2.7
12,347 - 8373 mRNA_5 0.18 -1.0
12,460 + 8373 mRNA_5 0.25 -1.8
12,560 + 8373 mRNA_5 0.31 -1.5
12,571 + 8373 mRNA_5 0.32 1.5
12,576 - 8373 mRNA_5 0.32 -1.1
12,622 - 8373 mRNA_5 0.35 -3.2
12,669 + 8373 mRNA_5 0.38 -1.8
12,747 + 8373 mRNA_5 0.42 -2.7