Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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595 + -0.9
609 - -3.3
637 - -2.1
651 + -2.8
654 + -4.1
659 - -2.8
663 + 0.7
672 - -0.6
673 + -0.8
685 + -1.1
725 + -1.3
790 - -1.9
791 + -1.9
798 + -1.0
798 + 0.1
804 - -2.0
821 + -3.8
860 + -1.7
899 - 0.5
916 + -2.2
939 + -0.8
957 + -2.6
975 - -3.0
976 + 3.1
996 - 1.2
1,005 + -0.7
1,005 - 0.2
1,007 - -0.6
1,052 + -2.5
1,058 + -1.2
1,070 + -2.5
1,113 - -2.2
1,115 - 0.2
1,117 + -0.3
1,207 + -1.1
1,257 + 0.9
1,285 - -1.9
1,359 - -1.0
1,422 + -1.8
1,960 + 8369 mRNA_1 0.44 -3.0
2,268 + 8369 mRNA_1 0.79 -1.1
2,361 - 8369 mRNA_1 0.89 -1.4
2,441 + -0.5
2,550 + -1.4
2,552 - -0.1
2,564 + 0.3
2,701 + -1.4
2,839 - -2.8
2,853 + -0.9
2,946 - -1.6
3,005 - -1.3
3,125 - 0.7
3,136 + -1.5