Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8489

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8488: 16856 - K03135 TAF11 transcription initiation factor TFIID subunit 11, at 1343775 to 1344763 16856 mRNA_8489: 16857 - K17768 TOM70 mitochondrial import receptor subunit TOM70, at 1344985 to 1347590 16857 mRNA_8490: 16858 - ProSitePatterns-Zinc finger PHD-type signature.-PS01359,ProSiteProfiles-Zinc finger PHD-type profile.-PS50016,SMART-PHD zinc finger-SM00249,SUPERFAMILY--SSF57903, at 1348197 to 1351879 16858

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,344,813 + -1.9
1,344,858 - -1.9
1,344,864 - 0.0
1,344,914 - -0.1
1,344,921 + -1.7
1,344,952 + -1.8
1,344,954 - -2.1
1,344,964 - -4.2
1,344,977 + -1.5
1,344,979 + -2.1
1,345,129 + -0.6
1,345,203 - -1.8
1,345,263 - 16857 mRNA_8489 0.11 -2.7
1,345,317 + 16857 mRNA_8489 0.13 -0.4
1,345,395 - 16857 mRNA_8489 0.16 -1.5
1,345,633 + 16857 mRNA_8489 0.25 0.5
1,345,975 - 16857 mRNA_8489 0.38 -1.3
1,345,990 + 16857 mRNA_8489 0.39 -0.9
1,346,001 - 16857 mRNA_8489 0.39 -1.2
1,346,026 - 16857 mRNA_8489 0.40 1.3
1,346,176 + 16857 mRNA_8489 0.46 -3.0
1,346,314 - 16857 mRNA_8489 0.51 -3.4
1,346,415 + 16857 mRNA_8489 0.55 -3.4
1,346,428 + 16857 mRNA_8489 0.55 -2.2
1,346,597 + 16857 mRNA_8489 0.62 -2.9
1,346,747 - 16857 mRNA_8489 0.68 -1.5
1,346,773 - 16857 mRNA_8489 0.69 -1.2
1,346,800 - 16857 mRNA_8489 0.70 -1.9
1,346,887 - 16857 mRNA_8489 0.73 -2.8
1,346,900 + 16857 mRNA_8489 0.73 -1.7
1,346,974 - 16857 mRNA_8489 0.76 -2.3
1,347,133 - 16857 mRNA_8489 0.82 -0.9
1,347,151 + 16857 mRNA_8489 0.83 -1.5
1,347,174 - 16857 mRNA_8489 0.84 -3.5
1,347,316 - 16857 mRNA_8489 0.89 -0.7
1,347,444 - -2.7
1,347,455 - -2.1
1,347,455 - -1.0
1,347,460 + -2.2
1,347,460 + -1.4
1,347,462 + -3.1
1,347,467 - -0.6
1,347,470 - -1.9
1,347,476 - -4.3
1,347,482 - -0.2
1,347,545 - -1.6
1,347,557 + -0.7
1,347,612 - -1.6
1,347,615 + 0.9
1,347,633 - -1.3
1,347,926 - 0.2
1,347,948 - -2.3
1,348,027 - -3.7
1,348,035 - -4.0
1,348,046 - -2.8
1,348,050 - -2.5
1,348,055 - -1.6
1,348,056 - -1.6
1,348,056 - 0.0
1,348,057 - -1.5
1,348,062 + -0.8
1,348,073 - -0.6
1,348,099 + -0.5
1,348,155 - -0.6
1,348,175 - -2.7
1,348,342 - -0.4
1,348,355 - -0.6
1,348,367 + -1.6
1,348,504 - -0.3
1,348,519 - -1.8
1,348,523 + -0.4
1,348,527 + -2.8
1,348,553 + -2.2