Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8446

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1247628 to 1249851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1250105 to 1254255 16814 mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1254806 to 1256692 16815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,249,136 - 16813 mRNA_8445 0.68 -1.4
1,249,167 - 16813 mRNA_8445 0.69 -0.3
1,249,551 - 16813 mRNA_8445 0.86 -0.5
1,249,570 - 16813 mRNA_8445 0.87 -1.1
1,249,604 - 16813 mRNA_8445 0.89 -3.1
1,249,736 - -2.1
1,249,831 - -0.4
1,250,241 + -2.9
1,250,354 - -2.7
1,250,363 + -2.0
1,250,419 - -1.9
1,250,462 - 0.9
1,250,763 - 16814 mRNA_8446 0.16 -0.5
1,250,779 - 16814 mRNA_8446 0.16 0.7
1,251,028 + 16814 mRNA_8446 0.22 -0.9
1,251,057 - 16814 mRNA_8446 0.23 -0.7
1,251,172 - 16814 mRNA_8446 0.26 -1.0
1,251,307 - 16814 mRNA_8446 0.29 1.1
1,251,369 - 16814 mRNA_8446 0.30 -2.1
1,251,472 - 16814 mRNA_8446 0.33 0.4
1,251,484 - 16814 mRNA_8446 0.33 -0.6
1,251,510 - 16814 mRNA_8446 0.34 -3.9
1,251,533 - 16814 mRNA_8446 0.34 -1.8
1,251,535 - 16814 mRNA_8446 0.34 -2.3
1,251,576 + 16814 mRNA_8446 0.35 -0.6
1,251,647 - 16814 mRNA_8446 0.37 -0.8
1,251,753 + 16814 mRNA_8446 0.40 -0.6
1,251,963 + 16814 mRNA_8446 0.45 -0.9
1,251,973 + 16814 mRNA_8446 0.45 -0.2
1,252,039 - 16814 mRNA_8446 0.47 1.6
1,252,080 + 16814 mRNA_8446 0.48 -0.2
1,252,352 + 16814 mRNA_8446 0.54 -0.1
1,252,832 + 16814 mRNA_8446 0.66 -0.4
1,252,949 - 16814 mRNA_8446 0.69 -0.4
1,252,986 - 16814 mRNA_8446 0.69 -1.8
1,253,094 - 16814 mRNA_8446 0.72 -1.9
1,253,144 + 16814 mRNA_8446 0.73 -3.3
1,253,446 + 16814 mRNA_8446 0.80 -1.4
1,253,552 - 16814 mRNA_8446 0.83 -1.9
1,253,844 - -1.5
1,253,844 + -2.8
1,253,963 + -2.1
1,254,217 - -1.2
1,254,290 + -3.3
1,254,406 - -1.5
1,254,413 + -3.1
1,254,435 + 1.1
1,254,439 - -3.0
1,254,445 + -2.2
1,254,451 + -2.8
1,254,496 + 1.1
1,254,503 - -1.3
1,254,539 - -1.4
1,254,540 - -2.6
1,254,604 - -2.9
1,254,606 - 0.6
1,254,611 - -1.4
1,254,626 - -0.9
1,254,627 - 0.2
1,254,632 - 0.5
1,254,745 + -1.7
1,254,761 + -2.7
1,254,764 + -0.7
1,254,778 + -0.4