Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8445

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1245656 to 1246720 16812 mRNA_8445: 16813 - KOG0691 Molecular chaperone (DnaJ superfamily), at 1247628 to 1249851 16813 mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1250105 to 1254255 16814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,246,645 - -0.6
1,246,652 + -1.3
1,246,654 + -1.1
1,246,792 + 0.8
1,246,792 + -0.9
1,246,810 - -2.0
1,246,833 + -0.2
1,246,840 + -2.5
1,246,841 + 0.3
1,246,849 + -0.6
1,246,861 + -2.4
1,246,867 - -2.5
1,246,953 - -1.1
1,247,005 + -2.5
1,247,267 + -0.8
1,247,281 - -2.1
1,247,443 - -2.1
1,247,564 + -1.9
1,247,573 + -1.7
1,247,576 + -2.6
1,247,578 + -0.8
1,247,581 - -1.6
1,247,583 - 0.0
1,247,591 - -1.4
1,247,598 - -1.3
1,247,617 + -3.2
1,247,635 + -1.0
1,247,692 + -1.7
1,247,696 + -3.3
1,247,704 - -0.4
1,247,717 - -1.6
1,247,719 + -2.6
1,247,723 + -0.7
1,247,748 - -2.4
1,247,772 - -0.8
1,247,783 - -1.6
1,247,884 + 16813 mRNA_8445 0.12 -2.6
1,247,984 + 16813 mRNA_8445 0.16 0.7
1,248,023 + 16813 mRNA_8445 0.18 -2.1
1,248,172 + 16813 mRNA_8445 0.24 -0.0
1,248,355 - 16813 mRNA_8445 0.33 0.5
1,248,435 - 16813 mRNA_8445 0.36 -1.5
1,248,605 - 16813 mRNA_8445 0.44 -0.6
1,248,606 + 16813 mRNA_8445 0.44 -2.1
1,248,636 + 16813 mRNA_8445 0.45 -3.6
1,248,986 + 16813 mRNA_8445 0.61 -0.8
1,249,066 - 16813 mRNA_8445 0.65 -1.1
1,249,136 - 16813 mRNA_8445 0.68 -1.4
1,249,167 - 16813 mRNA_8445 0.69 -0.3
1,249,551 - 16813 mRNA_8445 0.86 -0.5
1,249,570 - 16813 mRNA_8445 0.87 -1.1
1,249,604 - 16813 mRNA_8445 0.89 -3.1
1,249,736 - -2.1
1,249,831 - -0.4
1,250,241 + -2.9
1,250,354 - -2.7
1,250,363 + -2.0
1,250,419 - -1.9
1,250,462 - 0.9
1,250,763 - 16814 mRNA_8446 0.16 -0.5
1,250,779 - 16814 mRNA_8446 0.16 0.7