Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8442

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8441: 16809 - K09274 K09274 HMG box factor, other, at 1236360 to 1239302 16809 mRNA_8442: 16810 - K19852 KIN1_2 serine/threonine protein kinase KIN1/2, at 1239780 to 1244729 16810 mRNA_8443: 16811 - Hypothetical Protein, at 1244960 to 1245436 16811 mRNA_8444: 16812 - HMMPfam-HPP family-PF04982, at 1245656 to 1246720 16812

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,238,812 + 16809 mRNA_8441 0.83 -3.2
1,238,820 + 16809 mRNA_8441 0.84 -1.7
1,238,977 - 16809 mRNA_8441 0.89 -1.6
1,239,091 + -1.2
1,239,100 - -0.6
1,239,226 + -2.4
1,239,229 - -2.0
1,239,387 + -0.8
1,239,410 + -1.6
1,239,555 - -1.6
1,239,575 - -2.4
1,239,706 - -4.3
1,239,711 + -0.2
1,239,820 - -1.7
1,239,822 - -1.7
1,239,824 - -1.5
1,239,825 + -1.5
1,239,831 + -0.4
1,239,841 - -3.5
1,239,850 - 0.1
1,239,972 - -2.6
1,239,989 - -1.9
1,240,074 + -1.9
1,240,129 + -0.6
1,240,217 - -2.7
1,240,246 - 0.4
1,240,294 + 16810 mRNA_8442 0.10 0.9
1,240,687 - 16810 mRNA_8442 0.18 -1.2
1,240,706 - 16810 mRNA_8442 0.19 -0.8
1,240,960 - 16810 mRNA_8442 0.24 -1.2
1,241,303 - 16810 mRNA_8442 0.31 0.4
1,241,677 - 16810 mRNA_8442 0.38 -1.1
1,241,699 + 16810 mRNA_8442 0.39 -1.6
1,242,010 + 16810 mRNA_8442 0.45 -1.0
1,242,141 + 16810 mRNA_8442 0.48 -1.2
1,242,194 - 16810 mRNA_8442 0.49 -1.7
1,242,201 + 16810 mRNA_8442 0.49 1.6
1,242,375 + 16810 mRNA_8442 0.52 -1.8
1,242,506 + 16810 mRNA_8442 0.55 -0.2
1,242,575 - 16810 mRNA_8442 0.56 0.0
1,242,615 - 16810 mRNA_8442 0.57 -1.1
1,243,080 - 16810 mRNA_8442 0.67 -1.2
1,243,145 + 16810 mRNA_8442 0.68 0.4
1,243,470 + 16810 mRNA_8442 0.75 -4.6
1,243,532 + 16810 mRNA_8442 0.76 -0.4
1,243,974 + 16810 mRNA_8442 0.85 2.0
1,243,974 + 16810 mRNA_8442 0.85 -1.3
1,244,458 - -1.4
1,244,575 + -1.2
1,244,579 - -0.6
1,244,588 - -1.6
1,244,603 + -3.6
1,244,700 - -1.2
1,245,045 - 16811 mRNA_8443 0.18 -0.8
1,245,494 + 0.2
1,245,574 + -1.0