Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8441

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8440: 16808 - Hypothetical Protein, at 1234989 to 1235656 16808 mRNA_8441: 16809 - K09274 K09274 HMG box factor, other, at 1236360 to 1239302 16809 mRNA_8442: 16810 - K19852 KIN1_2 serine/threonine protein kinase KIN1/2, at 1239780 to 1244729 16810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,235,566 + 16808 mRNA_8440 0.86 -0.7
1,235,671 - 0.7
1,235,696 + 3.3
1,235,867 - -1.4
1,236,129 + 0.0
1,236,276 + -3.1
1,236,294 + -1.0
1,236,309 + -0.4
1,236,343 + -0.8
1,236,605 + -0.7
1,237,080 + 16809 mRNA_8441 0.24 -2.0
1,237,162 + 16809 mRNA_8441 0.27 -2.3
1,237,453 - 16809 mRNA_8441 0.37 -4.2
1,237,462 + 16809 mRNA_8441 0.37 0.8
1,237,475 + 16809 mRNA_8441 0.38 -2.6
1,237,619 - 16809 mRNA_8441 0.43 -2.6
1,237,620 + 16809 mRNA_8441 0.43 0.7
1,237,845 - 16809 mRNA_8441 0.50 -0.2
1,237,874 - 16809 mRNA_8441 0.51 -0.7
1,238,064 - 16809 mRNA_8441 0.58 -0.9
1,238,499 - 16809 mRNA_8441 0.73 -2.3
1,238,614 + 16809 mRNA_8441 0.77 -1.5
1,238,636 + 16809 mRNA_8441 0.77 -1.3
1,238,751 - 16809 mRNA_8441 0.81 -1.3
1,238,812 + 16809 mRNA_8441 0.83 -3.2
1,238,820 + 16809 mRNA_8441 0.84 -1.7
1,238,977 - 16809 mRNA_8441 0.89 -1.6
1,239,091 + -1.2
1,239,100 - -0.6
1,239,226 + -2.4
1,239,229 - -2.0
1,239,387 + -0.8
1,239,410 + -1.6
1,239,555 - -1.6
1,239,575 - -2.4
1,239,706 - -4.3
1,239,711 + -0.2
1,239,820 - -1.7
1,239,822 - -1.7
1,239,824 - -1.5
1,239,825 + -1.5
1,239,831 + -0.4
1,239,841 - -3.5
1,239,850 - 0.1
1,239,972 - -2.6
1,239,989 - -1.9
1,240,074 + -1.9
1,240,129 + -0.6
1,240,217 - -2.7
1,240,246 - 0.4
1,240,294 + 16810 mRNA_8442 0.10 0.9