Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8438

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8437: 16805 - K16948 CDC12 cell division control protein 12, at 1226776 to 1229088 16805 mRNA_8438: 16806 - K07910 RAB18 Ras-related protein Rab-18, at 1229197 to 1230748 16806 mRNA_8439: 16807 - KOG4162 Predicted calmodulin-binding protein, at 1231325 to 1234854 16807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,228,752 + 16805 mRNA_8437 0.85 -3.2
1,228,772 - 16805 mRNA_8437 0.86 -1.0
1,229,055 - -1.5
1,229,165 + -3.6
1,229,192 + -1.2
1,229,202 - -2.7
1,229,230 + -2.4
1,229,346 - -1.1
1,229,346 - 1.0
1,229,351 + -0.5
1,229,655 - 16806 mRNA_8438 0.30 -2.3
1,229,656 + 16806 mRNA_8438 0.30 -0.1
1,230,616 - -0.9
1,230,638 - -0.8
1,230,922 + -0.1
1,231,058 - -1.0
1,231,060 - -1.0
1,231,217 - -4.0
1,231,224 + -2.0
1,231,228 - -2.7
1,231,255 + -1.2
1,231,518 - 0.6
1,231,530 - -0.8
1,231,543 + -2.5
1,231,668 + -1.3