Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8400

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8399: 16767 - KOG1721 FOG Zn-finger, at 1128707 to 1128957 16767 mRNA_8400: 16768 - K12189 VPS25, EAP20 ESCRT-II complex subunit VPS25, at 1129262 to 1130136 16768 mRNA_8401: 16769 - K16315 GSG2 serine/threonine-protein kinase haspin, at 1130370 to 1132967 16769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,128,437 - -0.2
1,128,555 + 0.6
1,128,571 + 0.6
1,128,610 - -2.5
1,128,753 + 16767 mRNA_8399 0.18 -2.2
1,129,069 + -2.6
1,129,467 + 16768 mRNA_8400 0.23 -3.2
1,129,476 + 16768 mRNA_8400 0.24 -2.0
1,129,640 - 16768 mRNA_8400 0.43 -0.4
1,130,171 - -2.6
1,130,227 - -2.9
1,130,230 + -1.7
1,130,322 - -2.3
1,130,322 - -3.8
1,130,393 + -2.4
1,130,497 - -0.9
1,130,617 + 1.1
1,130,958 + 16769 mRNA_8401 0.23 -3.3
1,131,046 + 16769 mRNA_8401 0.26 -0.8
1,131,111 + 16769 mRNA_8401 0.29 -0.9
1,131,133 - 16769 mRNA_8401 0.29 -3.4