Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8394

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1108603 to 1114039 16761 mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1114553 to 1119513 16762 mRNA_8395: 16763 - SUPERFAMILY--SSF52047, at 1119619 to 1120614 16763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,113,786 - -1.2
1,113,786 - -0.5
1,113,786 - -1.2
1,113,787 - -1.1
1,113,791 + -2.6
1,113,942 - 0.2
1,114,060 - 0.1
1,114,108 - -1.5
1,114,245 + -0.1
1,114,259 - -1.1
1,114,272 - -0.6
1,114,533 + -1.9
1,114,697 + -0.1
1,114,699 + -3.6
1,114,701 + -2.7
1,114,703 - -1.8
1,114,996 + -1.6
1,115,217 + 16762 mRNA_8394 0.13 -3.0
1,115,668 + 16762 mRNA_8394 0.22 -2.5
1,117,384 + 16762 mRNA_8394 0.57 -2.7
1,117,404 - 16762 mRNA_8394 0.57 0.5
1,117,712 + 16762 mRNA_8394 0.64 -1.4
1,117,741 + 16762 mRNA_8394 0.64 -0.3
1,117,979 - 16762 mRNA_8394 0.69 -2.0
1,118,304 + 16762 mRNA_8394 0.76 -2.0
1,118,351 + 16762 mRNA_8394 0.77 -2.8
1,118,643 + 16762 mRNA_8394 0.82 -1.1
1,118,710 - 16762 mRNA_8394 0.84 -0.2
1,118,714 + 16762 mRNA_8394 0.84 -1.7
1,118,726 + 16762 mRNA_8394 0.84 -1.0
1,118,882 - 16762 mRNA_8394 0.87 0.0
1,119,037 + 0.2
1,119,132 + 0.3
1,119,133 + -0.7
1,119,148 + -3.3
1,119,305 - -3.2
1,119,305 - -1.7
1,119,314 + -1.4
1,119,389 - -0.7
1,119,511 + -0.5
1,119,565 + -2.2
1,119,596 + -0.4
1,119,753 + 16763 mRNA_8395 0.13 -1.2
1,119,926 + 16763 mRNA_8395 0.31 -1.4
1,120,219 - 16763 mRNA_8395 0.60 -0.6
1,120,351 + 16763 mRNA_8395 0.73 -0.8
1,120,453 - 16763 mRNA_8395 0.84 0.8