Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8393

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1104221 to 1108536 16760 mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1108603 to 1114039 16761 mRNA_8394: 16762 - KOG3680 Uncharacterized conserved protein, at 1114553 to 1119513 16762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,107,846 + 16760 mRNA_8392 0.84 -1.7
1,107,953 + 16760 mRNA_8392 0.86 -0.1
1,108,266 - -0.8
1,108,281 - -1.0
1,108,324 - 0.6
1,108,584 + -0.3
1,108,596 - -1.6
1,108,607 - -1.9
1,108,735 + -1.5
1,108,805 - -2.2
1,108,824 - -1.0
1,108,861 + -0.6
1,108,899 + -2.4
1,108,963 + -1.2
1,109,035 - -4.2
1,109,106 + -1.1
1,109,148 - 16761 mRNA_8393 0.10 -0.8
1,109,169 + 16761 mRNA_8393 0.10 0.1
1,109,625 - 16761 mRNA_8393 0.19 -3.3
1,109,663 + 16761 mRNA_8393 0.19 -1.7
1,109,914 + 16761 mRNA_8393 0.24 -1.7
1,109,966 + 16761 mRNA_8393 0.25 -1.7
1,110,014 - 16761 mRNA_8393 0.26 -0.4
1,110,067 - 16761 mRNA_8393 0.27 -1.8
1,110,185 - 16761 mRNA_8393 0.29 0.7
1,110,366 - 16761 mRNA_8393 0.32 -0.1
1,110,654 + 16761 mRNA_8393 0.38 -4.8
1,110,655 - 16761 mRNA_8393 0.38 -2.1
1,110,704 + 16761 mRNA_8393 0.39 0.1
1,110,812 + 16761 mRNA_8393 0.41 -1.1
1,111,240 - 16761 mRNA_8393 0.49 0.5
1,111,255 - 16761 mRNA_8393 0.49 -2.6
1,111,259 + 16761 mRNA_8393 0.49 -2.1
1,111,719 - 16761 mRNA_8393 0.57 -3.0
1,111,745 + 16761 mRNA_8393 0.58 -0.7
1,111,750 - 16761 mRNA_8393 0.58 -2.1
1,111,835 + 16761 mRNA_8393 0.59 -2.0
1,112,028 + 16761 mRNA_8393 0.63 -1.0
1,112,234 + 16761 mRNA_8393 0.67 -0.8
1,112,316 - 16761 mRNA_8393 0.68 0.8
1,112,500 + 16761 mRNA_8393 0.72 0.2
1,112,639 - 16761 mRNA_8393 0.74 -0.6
1,112,749 + 16761 mRNA_8393 0.76 -0.3
1,112,753 - 16761 mRNA_8393 0.76 -2.2
1,112,754 + 16761 mRNA_8393 0.76 -2.8
1,112,867 - 16761 mRNA_8393 0.78 0.1
1,113,358 + 16761 mRNA_8393 0.87 -1.9
1,113,786 - -1.2
1,113,786 - -0.5
1,113,786 - -1.2
1,113,787 - -1.1
1,113,791 + -2.6
1,113,942 - 0.2
1,114,060 - 0.1
1,114,108 - -1.5
1,114,245 + -0.1
1,114,259 - -1.1
1,114,272 - -0.6
1,114,533 + -1.9
1,114,697 + -0.1
1,114,699 + -3.6
1,114,701 + -2.7
1,114,703 - -1.8
1,114,996 + -1.6