Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8369

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8368: 16736 - K07119 K07119 uncharacterized protein, at 1048733 to 1050184 16736 mRNA_8369: 16737 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011, at 1050307 to 1054065 16737 mRNA_8370: 16738 - K12525 metL bifunctional aspartokinase / homoserine dehydrogenase 2, at 1054489 to 1055817 16738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,049,357 - 16736 mRNA_8368 0.43 -1.5
1,049,458 - 16736 mRNA_8368 0.50 1.3
1,049,765 + 16736 mRNA_8368 0.71 -1.9
1,049,779 + 16736 mRNA_8368 0.72 -0.6
1,050,154 - -1.6
1,050,156 + -0.5
1,050,605 - 1.1
1,051,290 + 16737 mRNA_8369 0.26 -3.9
1,051,313 - 16737 mRNA_8369 0.27 -2.6
1,051,799 + 16737 mRNA_8369 0.40 -2.4
1,051,892 + 16737 mRNA_8369 0.42 -1.6
1,052,066 - 16737 mRNA_8369 0.47 1.2
1,052,421 + 16737 mRNA_8369 0.56 -1.6
1,052,432 + 16737 mRNA_8369 0.57 -2.6
1,052,646 - 16737 mRNA_8369 0.62 -1.9
1,052,949 - 16737 mRNA_8369 0.70 -0.2
1,053,072 - 16737 mRNA_8369 0.74 -0.5
1,053,389 - 16737 mRNA_8369 0.82 -0.7
1,053,390 + 16737 mRNA_8369 0.82 -0.7
1,053,710 + 0.2
1,053,722 + -1.3
1,054,153 - -4.3
1,054,158 - -1.1
1,054,162 + -2.5
1,054,178 - 1.5
1,054,294 + 0.3
1,054,300 + -0.4
1,054,610 - -2.4
1,054,648 - 16738 mRNA_8370 0.12 1.9