Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8344

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8343: 16711 - Hypothetical Protein, at 983086 to 983598 16711 mRNA_8344: 16712 - K20308 TRAPPC11 trafficking protein particle complex subunit 11, at 984444 to 989069 16712 mRNA_8345: 16713 - K00062 E1.1.1.116 D-arabinose 1-dehydrogenase, at 989216 to 990816 16713

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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983,832 - -1.6
983,943 - 1.1
984,261 - 1.3
984,265 - 0.6
984,429 - -0.2
984,450 - 0.1
984,721 + -2.5
984,824 + -1.0
985,024 + 16712 mRNA_8344 0.13 -1.7
985,439 - 16712 mRNA_8344 0.22 -1.1
986,116 + 16712 mRNA_8344 0.36 -0.9
986,802 - 16712 mRNA_8344 0.51 -3.5
986,933 + 16712 mRNA_8344 0.54 -0.6
987,508 - 16712 mRNA_8344 0.66 -1.3
987,604 + 16712 mRNA_8344 0.68 -1.5
987,607 - 16712 mRNA_8344 0.68 -2.8
987,663 + 16712 mRNA_8344 0.70 -1.1
988,531 + 16712 mRNA_8344 0.88 -1.2
988,671 - -1.5
988,825 - -0.2
988,833 - -3.3
988,988 + -2.1
989,272 - -2.2
989,274 + -3.2
989,275 + -1.9
989,387 - 16713 mRNA_8345 0.11 0.6
989,389 - 16713 mRNA_8345 0.11 -1.1
989,393 - 16713 mRNA_8345 0.11 -1.7
989,418 + 16713 mRNA_8345 0.13 -1.4
989,426 - 16713 mRNA_8345 0.13 -1.0
989,593 - 16713 mRNA_8345 0.24 -1.8
989,595 - 16713 mRNA_8345 0.24 -1.3