Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8339

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972438 to 973571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973687 to 977357 16708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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971,660 - -0.4
971,671 + 0.3
971,943 - -3.7
972,119 + -1.3
972,192 - -0.8
972,205 + -0.1
972,232 - -2.5
972,252 - -1.7
972,283 - -2.4
972,296 + -0.4
972,371 + -0.4
972,384 - -2.2
972,568 + 16707 mRNA_8339 0.11 -0.7
972,684 + 16707 mRNA_8339 0.22 -1.9
972,711 + 16707 mRNA_8339 0.24 -0.5
972,715 + 16707 mRNA_8339 0.24 -3.1
972,717 + 16707 mRNA_8339 0.25 -0.3
972,719 + 16707 mRNA_8339 0.25 -2.4
972,725 + 16707 mRNA_8339 0.25 -3.2
972,838 + 16707 mRNA_8339 0.35 -0.8
972,891 + 16707 mRNA_8339 0.40 -3.2
973,193 + 16707 mRNA_8339 0.67 -1.5
973,194 - 16707 mRNA_8339 0.67 -1.8
973,195 - 16707 mRNA_8339 0.67 -0.7
973,461 - -0.1
973,461 - -0.8
973,489 + -1.5
973,620 - -0.7
973,626 + 0.1
973,635 + 2.5
973,638 - -1.1
973,640 + -2.8
973,648 + -0.4
973,653 - -0.3
973,658 + -1.0