Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8337

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968158 to 970145 16705 mRNA_8338: 16706 - Hypothetical Protein, at 970678 to 971361 16706

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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967,215 + 16704 mRNA_8336 0.66 -0.0
967,236 + 16704 mRNA_8336 0.67 -0.1
967,279 + 16704 mRNA_8336 0.70 0.2
967,504 + 16704 mRNA_8336 0.85 -2.9
967,657 + -1.6
967,666 + -1.3
967,796 + -1.1
967,803 - -0.4
967,807 - -2.7
967,809 + -1.4
967,811 - -2.3
967,813 + -1.6
967,815 - 0.1
967,837 - -1.7
967,850 + -1.5
967,861 + -2.1
967,863 - -2.4
968,012 + -1.6
968,034 - -0.5
968,128 - -0.4
968,435 - 16705 mRNA_8337 0.14 -2.3
968,608 - 16705 mRNA_8337 0.23 -4.5
968,717 + 16705 mRNA_8337 0.28 -1.5
968,742 + 16705 mRNA_8337 0.29 1.0
969,034 + 16705 mRNA_8337 0.44 -3.1
969,321 + 16705 mRNA_8337 0.59 -2.1
969,341 + 16705 mRNA_8337 0.60 -0.2
969,469 + 16705 mRNA_8337 0.66 -0.3
969,592 - 16705 mRNA_8337 0.72 0.6
969,746 - 16705 mRNA_8337 0.80 -0.6
969,895 - 16705 mRNA_8337 0.87 -0.5
969,904 + 16705 mRNA_8337 0.88 -0.4
970,019 + -1.7
970,078 + -1.8
970,083 + -0.8
970,371 + -1.0
970,375 - -2.1
970,376 + -1.9
970,377 + -2.1
970,409 + -3.3
970,431 + -0.8
970,471 + 0.4
970,487 - -2.4
970,495 + -2.4
970,503 - -2.7
970,620 - -1.1
970,793 + 16706 mRNA_8338 0.17 -0.3