Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8336

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964932 to 965872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704 mRNA_8337: 16705 - K01267 DNPEP aspartyl aminopeptidase, at 968158 to 970145 16705

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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965,315 + 16703 mRNA_8335 0.41 -0.4
965,322 + 16703 mRNA_8335 0.41 -2.7
965,333 + 16703 mRNA_8335 0.43 -1.3
965,338 + 16703 mRNA_8335 0.43 -1.0
965,345 + 16703 mRNA_8335 0.44 -1.8
965,356 + 16703 mRNA_8335 0.45 -2.2
965,470 - 16703 mRNA_8335 0.57 -1.1
965,488 - 16703 mRNA_8335 0.59 -2.5
965,499 + 16703 mRNA_8335 0.60 1.2
965,510 + 16703 mRNA_8335 0.61 -2.4
965,627 + 16703 mRNA_8335 0.74 -2.2
965,816 - -2.8
965,897 + 0.7
965,907 + -2.1
966,078 + -0.5
966,352 - -1.4
966,357 + -1.5
966,378 + 16704 mRNA_8336 0.10 -0.1
966,485 - 16704 mRNA_8336 0.18 -2.5
966,512 + 16704 mRNA_8336 0.19 -2.5
967,071 + 16704 mRNA_8336 0.56 -0.7
967,092 - 16704 mRNA_8336 0.57 -0.1
967,215 + 16704 mRNA_8336 0.66 -0.0
967,236 + 16704 mRNA_8336 0.67 -0.1
967,279 + 16704 mRNA_8336 0.70 0.2
967,504 + 16704 mRNA_8336 0.85 -2.9
967,657 + -1.6
967,666 + -1.3
967,796 + -1.1
967,803 - -0.4
967,807 - -2.7
967,809 + -1.4
967,811 - -2.3
967,813 + -1.6
967,815 - 0.1
967,837 - -1.7
967,850 + -1.5
967,861 + -2.1
967,863 - -2.4
968,012 + -1.6
968,034 - -0.5
968,128 - -0.4
968,435 - 16705 mRNA_8337 0.14 -2.3
968,608 - 16705 mRNA_8337 0.23 -4.5
968,717 + 16705 mRNA_8337 0.28 -1.5