Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8335

Experiments: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8334: 16702 - BLAST mtf1_muccl ame full transcription factor mtf1 [Licht..., at 961362 to 964238 16702 mRNA_8335: 16703 - HMMPfam-Shwachman-Bodian-Diamond syndrome (SBDS) protein-PF01172,SUPERFAMILY--SSF89895, at 964932 to 965872 16703 mRNA_8336: 16704 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 966219 to 967737 16704

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
963,982 + -3.0
964,148 - -3.1
964,156 - -1.9
964,248 + -3.0
964,264 + 0.1
964,279 - -3.1
964,316 - -1.6
964,425 - -2.3
964,430 - -1.3
964,447 - 0.2
964,449 - -4.5
964,455 - -1.8
964,458 - -0.9
964,598 - -0.9
964,599 - 0.2
964,600 - -4.1
964,601 - -2.6
964,606 - -1.1
964,606 - 0.6
964,608 - -0.5
964,612 - -1.9
964,616 + -0.6
964,617 + -0.6
964,618 + -2.2
964,634 + -1.0
964,786 - 0.9
964,796 + -0.7
964,798 + 2.2
964,840 - -2.7
964,840 - -0.6
964,846 + 3.2
964,850 + 0.6
964,855 + -2.5
964,856 + -1.6
964,865 - -2.6
964,866 + -1.4
964,866 + -1.1
964,870 + -1.0
964,875 - -1.8
964,877 - -0.8
964,887 + -1.9
965,048 - 16703 mRNA_8335 0.12 1.6
965,135 - 16703 mRNA_8335 0.22 -3.3
965,147 - 16703 mRNA_8335 0.23 -0.7
965,151 - 16703 mRNA_8335 0.23 -2.1
965,156 + 16703 mRNA_8335 0.24 -3.2
965,178 - 16703 mRNA_8335 0.26 -0.4
965,315 + 16703 mRNA_8335 0.41 -0.4
965,322 + 16703 mRNA_8335 0.41 -2.7
965,333 + 16703 mRNA_8335 0.43 -1.3
965,338 + 16703 mRNA_8335 0.43 -1.0
965,345 + 16703 mRNA_8335 0.44 -1.8
965,356 + 16703 mRNA_8335 0.45 -2.2
965,470 - 16703 mRNA_8335 0.57 -1.1
965,488 - 16703 mRNA_8335 0.59 -2.5
965,499 + 16703 mRNA_8335 0.60 1.2
965,510 + 16703 mRNA_8335 0.61 -2.4
965,627 + 16703 mRNA_8335 0.74 -2.2
965,816 - -2.8
965,897 + 0.7
965,907 + -2.1
966,078 + -0.5
966,352 - -1.4
966,357 + -1.5
966,378 + 16704 mRNA_8336 0.10 -0.1
966,485 - 16704 mRNA_8336 0.18 -2.5
966,512 + 16704 mRNA_8336 0.19 -2.5