Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8326

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8325: 16693 - KOG1688 Golgi proteins involved in ER retention (RER), at 945635 to 946237 16693 mRNA_8326: 16694 - Hypothetical Protein, at 947048 to 947790 16694 mRNA_8327: 16695 - K10251 HSD17B12, KAR, IFA38 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase, at 948369 to 949936 16695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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946,287 + -2.1
946,289 - -1.6
946,548 - -3.0
946,565 - -1.1
946,565 + -4.0
946,821 - -0.3
946,872 + 0.2
947,553 - 16694 mRNA_8326 0.68 -2.0
947,585 - 16694 mRNA_8326 0.72 -1.8
947,588 + 16694 mRNA_8326 0.73 -0.4
947,590 + 16694 mRNA_8326 0.73 -2.4
947,593 + 16694 mRNA_8326 0.73 -2.1
947,716 - -1.8
947,735 + -0.9
947,864 + -1.8
947,892 + -2.6
947,898 + -1.4
948,016 - 0.7
948,025 + -0.2
948,031 + -0.6
948,198 + -3.1
948,320 - 0.9
948,339 + -1.4
948,339 + -0.5