Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8293

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660 mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865837 to 868084 16661 mRNA_8294: 16662 - Hypothetical Protein, at 869009 to 869206 16662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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864,864 + 16660 mRNA_8292 0.17 -2.3
864,867 - 16660 mRNA_8292 0.17 0.4
864,870 - 16660 mRNA_8292 0.17 -0.7
864,876 - 16660 mRNA_8292 0.18 -2.1
864,898 + 16660 mRNA_8292 0.21 -1.4
864,981 + 16660 mRNA_8292 0.31 -0.9
865,030 + 16660 mRNA_8292 0.36 -2.2
865,094 + 16660 mRNA_8292 0.44 -1.9
865,297 + 16660 mRNA_8292 0.68 -2.8
865,338 + 16660 mRNA_8292 0.73 -1.6
865,417 + 16660 mRNA_8292 0.83 -1.1
865,727 - -0.1
865,881 + -2.2
865,904 + -0.7
866,010 - -2.5
866,010 - -1.3
866,756 + 16661 mRNA_8293 0.41 -3.2
867,202 + 16661 mRNA_8293 0.61 -1.6
867,447 + 16661 mRNA_8293 0.72 -0.6
867,642 - 16661 mRNA_8293 0.80 0.1
867,770 + 16661 mRNA_8293 0.86 -2.7
867,931 - -2.8
867,942 - -0.1
867,969 + 0.3
867,980 + -1.0
868,106 - -1.8
868,114 - -1.1
868,225 - 0.9
868,226 + -3.8
868,236 + -3.6
868,238 + -1.6
868,254 - -0.5
868,258 - -2.7
868,265 - -1.2
868,279 + -3.4
868,301 + -0.5
868,303 - -1.5
868,304 + -2.9
868,423 - -0.4
868,426 - -5.0
868,444 - -0.4
868,468 - -0.7
868,536 - -0.5
868,542 + -2.5
868,567 + -3.5
868,572 + 0.2
868,662 + -1.9
868,687 - -3.2
868,711 - -1.3
868,840 - -3.5
868,972 + -2.0
869,045 + 16662 mRNA_8294 0.18 -1.1
869,061 - 16662 mRNA_8294 0.26 0.4