Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8291

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8290: 16658 - K02327 POLD1 DNA polymerase delta subunit 1, at 858193 to 863054 16658 mRNA_8291: 16659 - K00851 E2.7.1.12, gntK, idnK gluconokinase, at 863269 to 864250 16659 mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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863,112 - -1.7
863,112 - -2.1
863,114 + -0.4
863,115 + 0.8
863,120 - -1.1
863,261 + -1.0
863,263 - -2.0
863,587 + 16659 mRNA_8291 0.32 -2.7
863,679 - 16659 mRNA_8291 0.42 -3.0
863,854 + 16659 mRNA_8291 0.60 -0.9
864,104 - 16659 mRNA_8291 0.85 -0.3
864,117 + 16659 mRNA_8291 0.86 -2.5
864,232 + 0.1
864,236 + 1.2
864,377 - -4.0
864,398 - -1.3
864,410 - -0.4
864,413 + -1.5
864,535 + -2.2
864,555 + -1.4
864,612 + -3.6
864,660 - -1.2
864,715 - -1.7
864,831 + 16660 mRNA_8292 0.13 -1.5
864,864 + 16660 mRNA_8292 0.17 -2.3
864,867 - 16660 mRNA_8292 0.17 0.4
864,870 - 16660 mRNA_8292 0.17 -0.7
864,876 - 16660 mRNA_8292 0.18 -2.1
864,898 + 16660 mRNA_8292 0.21 -1.4
864,981 + 16660 mRNA_8292 0.31 -0.9
865,030 + 16660 mRNA_8292 0.36 -2.2
865,094 + 16660 mRNA_8292 0.44 -1.9