Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8276

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8275: 16643 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 820228 to 822470 16643 mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822982 to 824358 16644 mRNA_8277: 16645 - Hypothetical Protein, at 824512 to 825100 16645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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822,191 - 16643 mRNA_8275 0.88 -2.0
822,211 - 16643 mRNA_8275 0.88 -1.4
822,229 - 16643 mRNA_8275 0.89 -1.3
822,234 + 16643 mRNA_8275 0.89 -0.1
822,369 + -1.3
822,374 + -1.7
822,395 - -0.5
822,487 - 1.2
822,525 + -2.0
822,661 + 0.9
822,763 - -3.6
822,776 - -0.4
822,776 - -0.3
822,785 + -2.5
822,791 + 1.4
822,795 + -2.8
822,796 - -1.2
822,800 - -3.1
822,804 - -1.1
822,938 - -1.0
822,940 - -3.7
822,947 + -0.8
822,955 - -3.3
822,955 + -1.1
822,956 - -0.9
822,969 + -1.4
822,969 + 0.3
822,973 + -1.5
823,080 - -1.3
823,083 + -1.8
823,085 - -0.5
823,094 - -3.9
823,096 - -2.0
823,104 + -2.2
823,108 + -2.0
823,110 + -0.5
823,110 + -3.5
823,115 - -3.1
823,116 - -1.4
823,116 - -1.1
823,122 + 16644 mRNA_8276 0.10 -2.2
823,137 - 16644 mRNA_8276 0.11 -0.7
823,144 + 16644 mRNA_8276 0.12 -2.9
823,233 - 16644 mRNA_8276 0.18 -1.5
823,254 + 16644 mRNA_8276 0.20 -2.4
823,272 - 16644 mRNA_8276 0.21 -3.1
823,275 - 16644 mRNA_8276 0.21 0.2
823,280 + 16644 mRNA_8276 0.22 -2.2
823,291 - 16644 mRNA_8276 0.22 -1.1
823,307 + 16644 mRNA_8276 0.24 -1.3
823,409 - 16644 mRNA_8276 0.31 -4.2
823,530 - 16644 mRNA_8276 0.40 -3.5
823,562 + 16644 mRNA_8276 0.42 -0.7
823,727 + 16644 mRNA_8276 0.54 -1.3
823,731 - 16644 mRNA_8276 0.54 -1.3
823,828 - 16644 mRNA_8276 0.61 -3.2
823,884 + 16644 mRNA_8276 0.66 -2.5
823,946 + 16644 mRNA_8276 0.70 -2.1
823,997 + 16644 mRNA_8276 0.74 -1.2
824,003 - 16644 mRNA_8276 0.74 -3.8
824,027 + 16644 mRNA_8276 0.76 -1.5
824,033 + 16644 mRNA_8276 0.76 -2.0
824,105 + 16644 mRNA_8276 0.82 -2.6
824,136 + 16644 mRNA_8276 0.84 -1.9
824,305 + -2.0
824,310 - -1.5
824,563 - -2.9
824,719 - 16645 mRNA_8277 0.35 -2.0
824,741 - 16645 mRNA_8277 0.39 -1.4
824,883 + 16645 mRNA_8277 0.63 -1.0
825,269 - -2.6
825,281 - -0.3