Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8262

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8261: 16629 - KOG0714 Molecular chaperone (DnaJ superfamily), at 791034 to 792171 16629 mRNA_8262: 16630 - K01958 PC, pyc pyruvate carboxylase, at 792361 to 796882 16630 mRNA_8263: 16631 - KOG1432 Predicted DNA repair exonuclease SIA1, at 797648 to 800551 16631

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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791,391 + 16629 mRNA_8261 0.31 -2.0
791,441 + 16629 mRNA_8261 0.36 -1.5
791,699 - 16629 mRNA_8261 0.58 -0.1
791,954 - 16629 mRNA_8261 0.81 -2.1
792,126 - -1.3
792,182 + -1.7
792,380 + 0.6
793,454 + 16630 mRNA_8262 0.24 -0.6
793,551 - 16630 mRNA_8262 0.26 1.0
793,638 + 16630 mRNA_8262 0.28 -1.6
794,292 + 16630 mRNA_8262 0.43 1.4
794,585 + 16630 mRNA_8262 0.49 -0.6
794,595 + 16630 mRNA_8262 0.49 -3.3
796,039 + 16630 mRNA_8262 0.81 0.7
796,190 - 16630 mRNA_8262 0.85 -1.9
796,465 - -0.4
796,756 + -0.8
796,770 + -1.4
796,773 - -1.2
796,793 - 0.0
796,809 + 0.2
796,906 - -1.0
796,906 + -1.4
796,926 + -2.0
796,939 + -0.1
796,944 - 0.3
796,956 + -4.0
797,053 - -0.5
797,057 - -4.4
797,082 - -0.1
797,084 + -0.1
797,087 - -1.4
797,090 + -2.2
797,112 - -1.2
797,221 + -0.3
797,222 + -1.8
797,223 - -2.1
797,238 - -1.4
797,251 - -2.4
797,275 + -2.0
797,283 - -1.3
797,284 + -3.2
797,288 - -0.4
797,300 + -2.0
797,301 + -0.1
797,319 - -1.3
797,321 - -3.1
797,356 + 0.6
797,360 - -1.5
797,361 - -2.7
797,376 - -0.5
797,377 + -1.4
797,389 - -1.3
797,408 + -1.2
797,413 - -2.1
797,415 + -3.5
797,424 + 0.7
797,714 - -0.2
797,863 - -1.6
797,872 - -2.2