Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8250

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8249: 16617 - SUPERFAMILY--SSF52047, at 762768 to 764331 16617 mRNA_8250: 16618 - K17069 MET17 O-acetylhomoserine/O-acetylserine sulfhydrylase, at 764459 to 766227 16618 mRNA_8251: 16619 - HMMPfam-SacI homology domain-PF02383,ProSiteProfiles-Sac phosphatase domain profile.-PS50275, at 766880 to 770400 16619

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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763,758 - 16617 mRNA_8249 0.63 -1.6
763,774 + 16617 mRNA_8249 0.64 -3.5
764,149 - 16617 mRNA_8249 0.88 -3.0
764,311 - -1.0
764,316 + -0.4
764,324 + -1.5
764,475 - -0.5
764,605 - -1.6
764,708 - 16618 mRNA_8250 0.14 -4.1
764,711 - 16618 mRNA_8250 0.14 -4.9
764,880 - 16618 mRNA_8250 0.24 -2.0
764,894 + 16618 mRNA_8250 0.25 -1.3
764,911 + 16618 mRNA_8250 0.26 -1.7
764,915 - 16618 mRNA_8250 0.26 -3.3
765,338 + 16618 mRNA_8250 0.50 -2.8
765,500 + 16618 mRNA_8250 0.59 -1.0
765,761 - 16618 mRNA_8250 0.74 1.2
765,908 + 16618 mRNA_8250 0.82 -0.6
766,023 + 16618 mRNA_8250 0.88 -1.7
766,059 + 0.3
766,071 - -2.3
766,201 - -1.1
766,214 + -4.6
766,284 - -2.2
766,331 - -0.3
766,340 - -2.2
766,358 - -0.4
766,505 + -1.3
766,651 - -0.5
766,655 + -1.7
766,667 + -0.4
766,958 - -3.9