Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8230

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720080 to 721710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722627 to 724673 16598 mRNA_8231: 16599 - KOG0927 Predicted transporter (ABC superfamily), at 725179 to 727142 16599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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721,755 - -3.9
721,764 + -0.9
721,789 + -2.4
721,790 - -1.5
721,798 + -2.8
721,798 + -0.4
721,800 + -2.0
721,803 - -2.1
721,810 - -1.0
721,817 + 0.5
721,886 + -0.1
721,890 - -1.8
721,942 - -1.6
721,949 + 0.4
721,955 - -0.5
721,960 - -0.0
721,967 + -0.9
721,977 + -1.0
722,068 - -1.6
722,076 + -1.6
722,078 + -1.3
722,079 + -2.0
722,079 + -1.9
722,092 - -0.4
722,098 - -3.2
722,099 + -2.5
722,099 - -2.4
722,107 - -1.3
722,109 - -1.1
722,115 - 0.6
722,116 + -0.2
722,116 + -0.5
722,154 - -0.8
722,156 + -0.3
722,156 - -1.7
722,157 + -2.4
722,173 - 0.4
722,178 + 0.9
722,179 + -1.6
722,183 + -0.1
722,184 + -0.4
722,184 + -2.1
722,187 - -1.7
722,189 + -2.5
722,194 - -0.7
722,197 + -0.4
722,198 + 1.1
722,201 + -2.1
722,204 - -0.2
722,212 - -1.4
722,222 - -3.2
722,225 - 0.3
722,238 + -1.2
722,265 + 0.7
722,270 - -2.3
722,278 - -0.8
722,285 + 0.1
722,290 + -2.2
722,310 - -1.8
722,346 + -1.4
722,384 - -0.8
722,397 + -2.0
722,411 - -2.2
722,412 + -0.4
722,420 - -1.9
722,421 + 0.1
722,431 + -1.4
722,432 + -0.9
722,434 - -0.4
722,711 + -1.5
722,866 + 16598 mRNA_8230 0.12 -4.0
723,279 - 16598 mRNA_8230 0.32 -1.6
723,292 - 16598 mRNA_8230 0.32 -2.9
723,305 - 16598 mRNA_8230 0.33 1.0
723,312 + 16598 mRNA_8230 0.33 0.6
723,563 + 16598 mRNA_8230 0.46 -1.9
723,725 + 16598 mRNA_8230 0.54 -0.5
723,728 - 16598 mRNA_8230 0.54 -2.4
724,317 - 16598 mRNA_8230 0.83 -2.5
724,584 - -2.6
724,753 - -2.7
724,908 + -2.4
724,914 - -2.1
724,917 - 1.0
724,923 + -2.3
725,046 + -0.6
725,094 - 0.2
725,191 - -2.0
725,210 + -1.6
725,238 - -3.5
725,241 - 0.4
725,363 + -3.7
725,641 + 16599 mRNA_8231 0.24 -1.3
725,670 - 16599 mRNA_8231 0.25 -1.7