Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8229

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716200 to 719512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720080 to 721710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722627 to 724673 16598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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719,217 - -1.3
719,536 - -1.3
719,644 - -0.4
719,645 - 0.4
719,647 - 0.7
719,647 - -2.1
719,669 + -0.4
719,800 + -2.7
719,939 + -1.9
719,939 + -1.4
720,213 - -3.5
720,218 - -1.0
720,236 - -1.5
720,522 - 16597 mRNA_8229 0.27 -1.5
720,539 + 16597 mRNA_8229 0.28 2.4
720,655 + 16597 mRNA_8229 0.35 -2.0
720,741 + 16597 mRNA_8229 0.41 -2.5
720,955 + 16597 mRNA_8229 0.54 -0.1
720,998 + 16597 mRNA_8229 0.56 -1.0
721,074 - 16597 mRNA_8229 0.61 -1.6
721,350 + 16597 mRNA_8229 0.78 -1.9
721,353 - 16597 mRNA_8229 0.78 -0.8
721,485 + 16597 mRNA_8229 0.86 -0.7
721,755 - -3.9
721,764 + -0.9
721,789 + -2.4
721,790 - -1.5
721,798 + -2.8
721,798 + -0.4
721,800 + -2.0
721,803 - -2.1
721,810 - -1.0
721,817 + 0.5
721,886 + -0.1
721,890 - -1.8
721,942 - -1.6
721,949 + 0.4
721,955 - -0.5
721,960 - -0.0
721,967 + -0.9
721,977 + -1.0
722,068 - -1.6
722,076 + -1.6
722,078 + -1.3
722,079 + -2.0
722,079 + -1.9
722,092 - -0.4
722,098 - -3.2
722,099 + -2.5
722,099 - -2.4
722,107 - -1.3
722,109 - -1.1
722,115 - 0.6
722,116 + -0.2
722,116 + -0.5
722,154 - -0.8
722,156 + -0.3
722,156 - -1.7
722,157 + -2.4
722,173 - 0.4
722,178 + 0.9
722,179 + -1.6
722,183 + -0.1
722,184 + -0.4
722,184 + -2.1
722,187 - -1.7
722,189 + -2.5
722,194 - -0.7
722,197 + -0.4
722,198 + 1.1
722,201 + -2.1
722,204 - -0.2
722,212 - -1.4
722,222 - -3.2
722,225 - 0.3
722,238 + -1.2
722,265 + 0.7
722,270 - -2.3
722,278 - -0.8
722,285 + 0.1
722,290 + -2.2
722,310 - -1.8
722,346 + -1.4
722,384 - -0.8
722,397 + -2.0
722,411 - -2.2
722,412 + -0.4
722,420 - -1.9
722,421 + 0.1
722,431 + -1.4
722,432 + -0.9
722,434 - -0.4