Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8163

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8162: 16530 - K01288 KEX1 carboxypeptidase D, at 560914 to 563494 16530 mRNA_8163: 16531 - HMMPfam-Domain of unknown function (DUF4505)-PF14956, at 563626 to 564400 16531 mRNA_8164: 16532 - Hypothetical Protein, at 564616 to 567626 16532

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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562,632 + 16530 mRNA_8162 0.67 -2.7
562,651 + 16530 mRNA_8162 0.67 -0.2
563,233 + 16530 mRNA_8162 0.90 -0.2
563,375 + -1.8
563,389 + -1.1
563,389 + -2.6
563,515 - -2.1
563,524 + -1.0
563,538 + -0.1
563,545 + -0.6
563,547 + -2.2
563,556 + -0.8
563,979 + 16531 mRNA_8163 0.46 -0.1
564,106 - 16531 mRNA_8163 0.62 -3.7
564,110 + 16531 mRNA_8163 0.62 -2.0
564,212 - 16531 mRNA_8163 0.76 -0.7
564,222 - 16531 mRNA_8163 0.77 -2.9
564,234 - 16531 mRNA_8163 0.78 -0.6
564,410 + -2.7
564,431 - -1.6
564,435 + -2.7
564,576 - -0.5
564,586 + 1.2
564,688 - 1.2
564,858 + -1.7
564,972 - 16532 mRNA_8164 0.12 0.3
565,035 + 16532 mRNA_8164 0.14 -0.2
565,147 + 16532 mRNA_8164 0.18 -2.3
565,150 - 16532 mRNA_8164 0.18 -1.4
565,175 + 16532 mRNA_8164 0.19 -1.9