Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8132

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8131: 16499 - KOG2431 1, 2-alpha-mannosidase, at 491877 to 495566 16499 mRNA_8132: 16500 - SUPERFAMILY--SSF52047, at 495876 to 497390 16500 mRNA_8133: 16501 - HMMPfam-Senescence-associated protein-PF06911, at 497849 to 499471 16501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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495,187 + 16499 mRNA_8131 0.90 -1.8
495,211 - -0.7
495,215 - -0.7
495,341 - 0.5
495,348 - -0.4
495,349 + -2.6
495,356 - 0.1
495,618 + -1.1
495,621 - -0.7
495,622 + -1.8
495,624 - -2.6
495,624 - -1.3
495,625 + -1.4
495,638 + -0.2
495,651 + 2.2
495,800 - 0.1
495,801 + -2.3
495,806 - -0.8
495,818 + -3.1
495,957 - -0.2
496,097 - 16500 mRNA_8132 0.15 -1.2
496,104 + 16500 mRNA_8132 0.15 1.6
496,105 - 16500 mRNA_8132 0.15 -0.9
496,106 + 16500 mRNA_8132 0.15 -1.9
496,391 + 16500 mRNA_8132 0.34 -1.2
496,401 + 16500 mRNA_8132 0.35 -0.1
496,525 - 16500 mRNA_8132 0.43 -0.2
496,986 + 16500 mRNA_8132 0.73 -0.3
497,224 - 16500 mRNA_8132 0.89 -2.5
497,333 - -2.4
497,419 + -0.7
497,422 - -2.1
497,431 - -1.2
497,435 + -2.0
497,436 - -0.2
497,446 + -2.8
497,446 - -1.1
497,453 - -2.6
497,579 + -0.5
497,590 + -1.3
497,626 - -0.7
497,705 + -1.2
497,897 - -0.1
497,918 + -2.0
497,932 + -3.0
498,046 + 16501 mRNA_8133 0.12 0.7
498,348 + 16501 mRNA_8133 0.31 -0.7