Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8129

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8128: 16496 - KOG0526 Nucleosome-binding factor SPN, POB3 subunit, at 485757 to 486942 16496 mRNA_8129: 16497 - KOG0543 FKBP-type peptidyl-prolyl cis-trans isomerase, at 487427 to 488552 16497 mRNA_8130: 16498 - BLAST transcription factor [Pseudozyma hubeiensis SY62], at 488795 to 491438 16498

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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486,870 - -2.2
486,873 + -3.2
487,134 + -4.2
487,246 - -0.3
487,890 - 16497 mRNA_8129 0.41 -0.0
488,052 + 16497 mRNA_8129 0.56 -1.3
488,191 + 16497 mRNA_8129 0.68 -1.2
488,195 - 16497 mRNA_8129 0.68 -0.3
488,274 + 16497 mRNA_8129 0.75 -1.4
488,468 + -2.7
488,600 + -1.9
488,609 - -0.6
488,621 + -0.1
488,646 - -1.3
488,820 + -0.7
489,072 + 16498 mRNA_8130 0.10 -1.0
489,083 + 16498 mRNA_8130 0.11 -3.5
489,354 + 16498 mRNA_8130 0.21 -2.8
489,372 + 16498 mRNA_8130 0.22 0.4