Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8116

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8115: 16483 - K03868 RBX1, ROC1 RING-box protein 1, at 452309 to 453227 16483 mRNA_8116: 16484 - K00949 thiN, TPK1, THI80 thiamine pyrophosphokinase, at 453564 to 454690 16484 mRNA_8117: 16485 - K06041 kdsD, kpsF arabinose-5-phosphate isomerase, at 455080 to 456482 16485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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453,276 - -0.7
453,412 - -1.5
453,573 - 0.3
454,450 + 16484 mRNA_8116 0.79 0.9
454,726 - -0.9
454,733 - 0.6
454,743 - -2.2
454,745 - -1.4
454,751 + -2.7
454,753 + 0.0
454,761 + -3.8
454,761 + -0.4
454,766 + -3.2
454,816 - 0.1
454,881 - -1.3
454,935 + -2.2
454,943 - -1.6
454,945 - -4.2
454,949 + -0.2
454,950 + -0.2
454,951 - -3.4
454,951 - -1.4
454,952 - -1.2
454,952 + -2.6
454,953 + -4.0
454,953 + -2.8
454,953 + 0.2
454,956 - -0.5
454,957 + -0.9
454,958 - -0.2
454,959 - -2.4
454,962 + -2.3
454,962 + -1.3
454,965 - -0.9
454,966 - -0.6
454,968 + -2.6
454,969 + -1.6
454,970 + -0.8
454,971 + -0.5
454,973 + -2.1
454,973 + -2.7
454,977 - -3.1
454,994 + 0.2
454,994 - 0.0
454,994 - -2.4
454,996 - 0.1
454,997 + -1.9
454,997 + -2.0
455,011 - 0.2
455,015 - 1.0
455,019 + -2.1
455,021 - -2.6
455,024 + -0.5
455,150 - -1.0
455,161 + -3.2
455,163 + -3.5
455,188 + -1.2
455,189 - -0.5
455,191 - -2.7
455,337 + 16485 mRNA_8117 0.18 -0.8
455,592 + 16485 mRNA_8117 0.36 -2.6