Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8110

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434477 to 437050 16477 mRNA_8110: 16478 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 437598 to 439156 16478 mRNA_8111: 16479 - HMMPfam-CTD kinase subunit gamma CTK3-PF12243,HMMPfam-CTD kinase subunit gamma CTK3 C-terminus-PF12350,ProSiteProfiles-CID domain profile.-PS51391, at 439350 to 440597 16479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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436,599 + 16477 mRNA_8109 0.82 -2.6
436,722 + 16477 mRNA_8109 0.87 -0.2
436,865 - -0.2
436,953 - -1.2
436,962 - -2.2
437,009 - -1.9
437,051 + -1.3
437,068 + -1.6
437,140 - -3.7
437,167 - -0.4
437,182 + -3.5
437,185 + -0.1
437,190 - -0.0
437,191 + -2.5
437,195 + -0.1
437,203 + -0.8
437,204 - -1.8
437,207 - -0.3
437,208 - -1.4
437,210 - 1.1
437,213 - 1.3
437,238 - 0.2
437,253 + 0.5
437,272 - -0.3
437,278 + -1.0
437,280 + 0.3
437,298 - -1.2
437,306 + -2.3
437,309 + -2.9
437,310 + 0.6
437,337 + -1.1
437,338 - -2.3
437,365 + -1.8
437,379 + -1.2
437,382 + -4.1
437,382 - -1.2
437,390 - -3.6
437,395 + -1.2
437,395 - -0.2
437,407 - -2.1
437,413 + -0.2
437,421 - -0.9
437,423 - -0.3
437,425 + -0.0
437,426 + -0.8
437,428 + -2.8
437,470 + -2.6
437,474 - -0.1
437,477 + -1.5
437,483 - -1.4
437,485 - -0.3
437,490 + -2.6
437,496 + 0.3
437,500 + -0.1
437,508 + 0.0
437,512 + -1.2
437,516 + 0.9
437,518 + -0.4
437,521 + 0.2
437,527 - -1.1
437,529 - -1.1
437,533 + -2.1
437,539 - -2.1
437,539 + -1.9
437,546 + -2.4
437,570 - -0.8
437,594 + -2.5
437,676 - 0.1
437,688 + -1.1
437,737 - -0.4
437,830 + 16478 mRNA_8110 0.15 -2.9
437,834 + 16478 mRNA_8110 0.15 -0.4
437,976 - 16478 mRNA_8110 0.24 -2.0
437,997 - 16478 mRNA_8110 0.26 -2.3
438,154 - 16478 mRNA_8110 0.36 -1.5
438,327 - 16478 mRNA_8110 0.47 -0.3
439,177 - -0.9
439,283 - -2.0
439,298 + -1.5