Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8094

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8093: 16461 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 402120 to 403069 16461 mRNA_8094: 16462 - K10775 PAL phenylalanine ammonia-lyase, at 403260 to 405803 16462 mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406311 to 408343 16463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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402,312 - 16461 mRNA_8093 0.20 -1.4
402,367 - 16461 mRNA_8093 0.26 -1.6
402,448 - 16461 mRNA_8093 0.35 -2.2
402,596 - 16461 mRNA_8093 0.50 -1.6
402,763 - 16461 mRNA_8093 0.68 2.1
402,810 + 16461 mRNA_8093 0.73 -3.4
403,041 + -1.3
403,075 + -3.9
403,131 - -1.2
403,188 - -3.3
403,237 - -2.4
403,278 + -1.4
403,305 - -2.4
403,667 + 16462 mRNA_8094 0.16 0.1
404,217 - 16462 mRNA_8094 0.38 -0.1
404,218 - 16462 mRNA_8094 0.38 -2.8
404,951 + 16462 mRNA_8094 0.66 2.5
404,964 - 16462 mRNA_8094 0.67 -2.1
404,987 + 16462 mRNA_8094 0.68 1.4
405,084 - 16462 mRNA_8094 0.72 -2.2
405,815 - 0.4
405,871 + -4.3
405,875 + -2.0
405,875 + -2.2
405,909 - -0.5
405,913 + -2.3
405,936 + -0.5
405,942 + -1.3
405,950 + -0.0
406,015 - -1.5
406,242 + -1.7
406,532 + 16463 mRNA_8095 0.11 -1.6