Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8078

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8077: 16445 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 369539 to 370935 16445 mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371130 to 372195 16446 mRNA_8079: 16447 - BLAST PRMT5-domain-containing protein [Sanghuangporus baumii], at 372456 to 373383 16447

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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370,138 + 16445 mRNA_8077 0.43 -0.2
370,141 + 16445 mRNA_8077 0.43 -2.0
370,146 - 16445 mRNA_8077 0.43 -0.5
370,156 - 16445 mRNA_8077 0.44 -1.1
370,163 - 16445 mRNA_8077 0.45 -0.0
370,215 + 16445 mRNA_8077 0.48 -0.7
370,241 - 16445 mRNA_8077 0.50 -2.3
370,260 + 16445 mRNA_8077 0.52 -0.6
370,442 - 16445 mRNA_8077 0.65 -1.3
370,450 - 16445 mRNA_8077 0.65 -0.5
370,473 - 16445 mRNA_8077 0.67 -0.7
370,483 + 16445 mRNA_8077 0.68 -0.2
370,539 + 16445 mRNA_8077 0.72 -1.6
370,608 - 16445 mRNA_8077 0.77 -2.1
370,651 - 16445 mRNA_8077 0.80 -2.1
370,674 + 16445 mRNA_8077 0.81 -1.6
370,770 + 16445 mRNA_8077 0.88 1.4
370,912 + -1.2
371,081 + -1.0
371,207 - -1.1
371,215 + -0.2
371,222 + -3.6
371,782 - 16446 mRNA_8078 0.61 0.2
371,802 - 16446 mRNA_8078 0.63 -1.3
371,827 - 16446 mRNA_8078 0.65 -0.2
371,956 - 16446 mRNA_8078 0.77 -2.9
371,958 - 16446 mRNA_8078 0.78 -3.3
371,969 + 16446 mRNA_8078 0.79 -3.0
372,096 - 0.3
372,110 + -0.8
372,267 + -2.0
372,527 + -0.9
372,675 - 16447 mRNA_8079 0.24 -3.1
373,117 - 16447 mRNA_8079 0.71 -0.6
373,124 + 16447 mRNA_8079 0.72 -1.7