Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8074

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8073: 16441 - Hypothetical Protein, at 361679 to 362906 16441 mRNA_8074: 16442 - Hypothetical Protein, at 363316 to 363918 16442 mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364328 to 367178 16443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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362,394 + 16441 mRNA_8073 0.58 0.1
362,396 - 16441 mRNA_8073 0.58 -2.9
362,426 + 16441 mRNA_8073 0.61 -2.4
362,537 - 16441 mRNA_8073 0.70 -0.2
362,839 - -2.5
362,964 - -1.5
363,551 - 16442 mRNA_8074 0.39 -1.4
363,565 - 16442 mRNA_8074 0.41 -1.0
363,569 + 16442 mRNA_8074 0.42 -2.6
363,691 - 16442 mRNA_8074 0.62 -0.9
363,843 + 16442 mRNA_8074 0.87 0.1
363,961 + -0.7
363,980 - -1.4
363,987 + 1.2
364,120 - -2.3
364,140 - -1.4
364,165 + -1.4
364,281 - -1.6
364,298 - -3.0