Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8070

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357161 to 359241 16439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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351,975 + -2.5
352,103 - -1.1
352,112 + -1.7
352,381 - -2.0
352,381 - 1.4
352,413 - -0.5
352,415 - -3.1
352,422 - -1.3
352,547 - -0.3
352,692 - -3.3
352,692 - -1.8
352,693 - -1.5
352,700 + -3.2
352,709 - -2.7
352,714 + -4.1
352,855 - -1.1
352,884 - -0.1
352,999 - -1.2
353,272 - -2.4
353,425 - 16438 mRNA_8070 0.13 -0.1
353,440 + 16438 mRNA_8070 0.14 -0.8
353,507 - 16438 mRNA_8070 0.16 -1.7
353,521 + 16438 mRNA_8070 0.16 0.7
354,060 + 16438 mRNA_8070 0.32 -1.6
354,141 + 16438 mRNA_8070 0.34 -1.5
354,298 + 16438 mRNA_8070 0.39 -3.2
354,417 + 16438 mRNA_8070 0.42 0.4
354,542 - 16438 mRNA_8070 0.46 -2.0
355,010 + 16438 mRNA_8070 0.60 0.2
355,170 + 16438 mRNA_8070 0.65 -0.4
355,201 - 16438 mRNA_8070 0.65 1.1
355,461 - 16438 mRNA_8070 0.73 -0.7
355,720 - 16438 mRNA_8070 0.81 -0.7
355,736 + 16438 mRNA_8070 0.81 -1.8
355,993 - 16438 mRNA_8070 0.89 0.0
356,002 + 16438 mRNA_8070 0.89 -1.2
356,006 + 16438 mRNA_8070 0.89 -0.7
356,185 - -2.3
356,224 + -1.6
356,228 + -0.8
356,331 - -3.7
356,336 + -2.6
356,344 + -0.2
356,361 + -0.3
356,372 - -2.0
356,373 - 0.1
356,374 - -0.2
356,389 + -2.9
356,390 + -0.1
356,411 - -0.2
356,431 - -0.2
356,460 + -0.9
356,492 + -2.8
356,492 + 0.4
356,499 + 0.4
356,506 + -4.4
356,533 + 0.6
356,534 - -0.4
356,597 - -0.6
356,608 + -1.5
356,611 - -1.1
356,613 - 0.0
356,614 + -0.4
356,614 + -2.7
356,614 - -1.7
356,618 + -0.4
356,620 + -1.1
356,626 + -0.1
356,626 + -1.3
356,628 - -0.0
356,630 - 0.6
356,633 - 0.1
356,636 + -1.9
356,639 - -0.1
356,658 - -3.2
356,764 - -3.2
356,852 - 0.4
356,866 - -0.2
356,886 - -0.3
356,909 + -1.6
356,916 + -1.3
356,918 - -2.3
356,934 + -1.8
356,934 - -2.1
356,935 + -3.1
356,936 - -3.1
356,949 - -3.4
356,950 - -0.5
356,967 - -2.7
356,997 + -1.7
357,026 + -1.9
357,077 + 0.9
357,128 - 0.5
357,223 + -0.0