Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8069

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347734 to 349027 16436 mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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348,296 + 16436 mRNA_8068 0.43 -2.0
348,393 - 16436 mRNA_8068 0.51 -2.8
348,858 + 16436 mRNA_8068 0.87 -1.3
348,881 + 16436 mRNA_8068 0.89 -0.3
349,280 - -2.2
349,617 + 16437 mRNA_8069 0.12 -0.1
349,738 - 16437 mRNA_8069 0.16 -1.7
349,794 - 16437 mRNA_8069 0.18 -0.5
349,851 - 16437 mRNA_8069 0.20 -1.5
349,880 - 16437 mRNA_8069 0.21 -1.8
350,063 - 16437 mRNA_8069 0.27 -2.9
350,216 + 16437 mRNA_8069 0.32 -2.1
350,505 + 16437 mRNA_8069 0.42 -1.1
351,071 - 16437 mRNA_8069 0.61 -0.4
351,372 - 16437 mRNA_8069 0.71 -1.7
351,519 - 16437 mRNA_8069 0.76 -0.7
351,551 - 16437 mRNA_8069 0.77 -3.4
351,798 - 16437 mRNA_8069 0.85 0.3
351,799 - 16437 mRNA_8069 0.85 -2.6
351,807 + 16437 mRNA_8069 0.85 -1.8
351,965 - -0.6
351,975 + -2.5
352,103 - -1.1
352,112 + -1.7
352,381 - -2.0
352,381 - 1.4
352,413 - -0.5
352,415 - -3.1
352,422 - -1.3
352,547 - -0.3
352,692 - -3.3
352,692 - -1.8
352,693 - -1.5
352,700 + -3.2
352,709 - -2.7
352,714 + -4.1
352,855 - -1.1
352,884 - -0.1
352,999 - -1.2