Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8064

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431 mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333407 to 335918 16432 mRNA_8065: 16433 - KOG0732 AAA+-type ATPase containing the bromodomain, at 336013 to 341106 16433

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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332,644 - 16431 mRNA_8063 0.69 -0.8
332,655 + 16431 mRNA_8063 0.70 -1.7
332,667 + 16431 mRNA_8063 0.71 -0.9
332,796 - 16431 mRNA_8063 0.79 -1.2
332,801 - 16431 mRNA_8063 0.80 -2.9
332,930 - 16431 mRNA_8063 0.88 -1.9
332,950 + 16431 mRNA_8063 0.89 -1.2
333,080 - 0.2
333,111 + 0.8
333,126 - -1.2
333,210 - -3.1
333,229 + -1.4
333,231 + -1.7
333,254 + -0.3
333,262 - -0.1
333,264 + -0.9
333,269 - -1.7
333,273 + -1.9
333,278 - -1.7
333,279 + -0.1
333,374 - 0.1
333,398 + -1.6
333,412 - -2.0
333,427 + 0.6
333,522 - -3.4
333,543 - -0.7
333,548 + -0.1
333,548 + 0.3
333,579 - -0.2
333,599 - -0.3
333,721 + 16432 mRNA_8064 0.12 -1.4
333,835 - 16432 mRNA_8064 0.17 -2.7
333,850 - 16432 mRNA_8064 0.18 -2.5
333,860 + 16432 mRNA_8064 0.18 -2.7
333,989 + 16432 mRNA_8064 0.23 -2.8
334,054 + 16432 mRNA_8064 0.26 -1.1
334,281 + 16432 mRNA_8064 0.35 -1.9
334,413 + 16432 mRNA_8064 0.40 -1.1
334,447 + 16432 mRNA_8064 0.41 -1.9
334,450 - 16432 mRNA_8064 0.42 -0.8
334,983 + 16432 mRNA_8064 0.63 -1.0
335,042 + 16432 mRNA_8064 0.65 -2.3
335,154 + 16432 mRNA_8064 0.70 -0.0
335,297 + 16432 mRNA_8064 0.75 -2.4
335,322 + 16432 mRNA_8064 0.76 -2.3
335,341 + 16432 mRNA_8064 0.77 -2.0
335,472 + 16432 mRNA_8064 0.82 -0.8
335,490 - 16432 mRNA_8064 0.83 -4.2
335,822 + 1.0
335,841 - -1.0
336,808 + 16433 mRNA_8065 0.16 -0.6