Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8063

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8062: 16430 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 329647 to 331079 16430 mRNA_8063: 16431 - HMMPfam-Protein of unknown function (DUF3500)-PF12006, at 331587 to 333110 16431 mRNA_8064: 16432 - HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 333407 to 335918 16432

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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330,607 - 16430 mRNA_8062 0.67 -1.4
330,723 - 16430 mRNA_8062 0.75 -1.7
330,750 - 16430 mRNA_8062 0.77 -1.6
330,976 - -2.6
331,009 + -1.7
331,121 - -3.2
331,136 - 0.3
331,146 - -0.5
331,203 + -1.4
331,272 + -0.4
331,281 + -1.5
331,288 - -0.7
331,305 + -1.2
331,315 + -3.5
331,325 - 0.2
331,330 + -1.0
331,343 - -0.7
331,351 - -2.2
331,351 - -2.0
331,352 - -1.1
331,359 + -3.5
331,359 - 0.4
331,360 + -0.7
331,364 - -0.9
331,365 - -1.8
331,373 - -2.3
331,379 + -3.2
331,384 + -2.1
331,394 + -2.1
331,496 + -1.0
331,506 - -0.1
331,522 - -0.8
331,535 + -4.1
331,636 - -0.9
331,667 + -1.0
331,767 + 16431 mRNA_8063 0.12 -1.7
331,780 - 16431 mRNA_8063 0.13 -0.0
332,644 - 16431 mRNA_8063 0.69 -0.8
332,655 + 16431 mRNA_8063 0.70 -1.7
332,667 + 16431 mRNA_8063 0.71 -0.9
332,796 - 16431 mRNA_8063 0.79 -1.2
332,801 - 16431 mRNA_8063 0.80 -2.9
332,930 - 16431 mRNA_8063 0.88 -1.9
332,950 + 16431 mRNA_8063 0.89 -1.2
333,080 - 0.2
333,111 + 0.8
333,126 - -1.2
333,210 - -3.1
333,229 + -1.4
333,231 + -1.7
333,254 + -0.3
333,262 - -0.1
333,264 + -0.9
333,269 - -1.7
333,273 + -1.9
333,278 - -1.7
333,279 + -0.1
333,374 - 0.1
333,398 + -1.6
333,412 - -2.0
333,427 + 0.6
333,522 - -3.4
333,543 - -0.7
333,548 + -0.1
333,548 + 0.3
333,579 - -0.2
333,599 - -0.3
333,721 + 16432 mRNA_8064 0.12 -1.4
333,835 - 16432 mRNA_8064 0.17 -2.7
333,850 - 16432 mRNA_8064 0.18 -2.5
333,860 + 16432 mRNA_8064 0.18 -2.7
333,989 + 16432 mRNA_8064 0.23 -2.8
334,054 + 16432 mRNA_8064 0.26 -1.1