Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8060

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8059: 16427 - HMMPfam-Translation initiation factor IF-3, C-terminal domain-PF00707,HMMPfam-Translation initiation factor IF-3, N-terminal domain-PF05198,SUPERFAMILY--SSF54364,SUPERFAMILY--SSF55200, at 324105 to 324902 16427 mRNA_8060: 16428 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 325618 to 328246 16428 mRNA_8061: 16429 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 329115 to 329494 16429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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325,074 - -3.1
325,242 + -2.2
325,408 + -2.3
325,415 + -1.7
325,417 - 0.5
325,420 - -2.4
325,422 - -1.3
325,452 + -3.0
325,481 + -0.6
325,487 - -3.0
325,488 - 0.0
325,492 - -2.8
325,494 - -3.1
325,505 + -0.3
325,506 + -1.7
325,508 - -1.7
325,511 - -4.2
325,520 + -0.1
325,532 + -1.7
325,558 - -1.2
325,561 + -2.5
325,565 + -1.0
325,567 + -2.2
325,568 + -0.3
325,575 - -0.1
325,584 - -2.2
325,724 - 0.4
325,730 - 0.8
325,734 + -0.3
325,737 + -0.4
325,737 - -0.9
325,738 + -0.0
325,739 + -1.0
325,744 + -3.0
325,747 - -2.1
325,865 - -0.2
325,880 - 0.7
325,886 - 16428 mRNA_8060 0.10 -1.2
325,898 + 16428 mRNA_8060 0.11 -1.3
326,005 + 16428 mRNA_8060 0.15 -2.0
326,033 + 16428 mRNA_8060 0.16 -4.2
326,034 - 16428 mRNA_8060 0.16 -4.3
326,045 + 16428 mRNA_8060 0.16 -2.9
326,185 - 16428 mRNA_8060 0.22 -0.6
326,224 + 16428 mRNA_8060 0.23 -1.1
326,902 + 16428 mRNA_8060 0.49 -1.2
326,920 - 16428 mRNA_8060 0.50 0.1
327,243 + 16428 mRNA_8060 0.62 -1.8
327,362 + 16428 mRNA_8060 0.66 -0.8
327,508 + 16428 mRNA_8060 0.72 2.1
327,529 - 16428 mRNA_8060 0.73 -0.7
327,617 - 16428 mRNA_8060 0.76 -3.0
327,618 + 16428 mRNA_8060 0.76 -1.9
327,662 - 16428 mRNA_8060 0.78 -1.4
327,708 + 16428 mRNA_8060 0.79 -1.3
328,227 - -0.1
328,396 - 0.9
328,530 + -0.6
328,827 - 0.4
328,852 - -4.0