Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8035

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272460 to 275670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275930 to 278853 16403 mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279404 to 281646 16404

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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275,072 - 16402 mRNA_8034 0.81 -1.6
275,104 - 16402 mRNA_8034 0.82 -2.3
275,223 + 16402 mRNA_8034 0.86 -2.5
275,384 - -2.3
275,417 - -0.1
275,435 + -1.0
275,541 - -0.7
275,563 - -0.2
275,564 - -0.7
275,565 - -0.6
275,571 - -2.5
275,610 - -0.8
275,613 + -2.7
275,633 + 1.5
275,705 - -1.5
275,709 - -2.5
275,713 - 0.6
275,716 + -0.4
275,718 - -3.1
275,723 - -1.0
275,723 - -0.7
275,726 + 0.9
275,735 + -0.1
275,742 - -1.9
275,763 - -1.2
275,763 + -3.7
276,030 + -3.2
276,083 - -2.2
276,166 - 0.4
276,201 - -2.0
276,456 + 16403 mRNA_8035 0.18 -1.3
276,510 - 16403 mRNA_8035 0.20 -0.1
276,891 + 16403 mRNA_8035 0.33 -0.3
277,186 + 16403 mRNA_8035 0.43 -0.7
277,456 - 16403 mRNA_8035 0.52 -2.0
277,466 + 16403 mRNA_8035 0.53 -3.0
277,616 - 16403 mRNA_8035 0.58 -2.4
277,634 + 16403 mRNA_8035 0.58 -0.7
277,779 + 16403 mRNA_8035 0.63 -2.3
277,846 - 16403 mRNA_8035 0.66 -1.0
277,849 + 16403 mRNA_8035 0.66 -2.8
278,213 + 16403 mRNA_8035 0.78 -1.1
278,602 - -0.7
278,682 - -1.7
278,919 - -2.5
279,072 - -2.0
279,079 + -2.2
279,221 - -1.1
279,221 - -0.8
279,241 + -1.9
279,250 - -2.9
279,348 + -0.0
279,359 - 0.4
279,360 - -2.3
279,366 + -1.7
279,375 + -0.9
279,379 + 0.4