Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8025

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233351 to 234544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235031 to 239261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239573 to 243561 16394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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234,578 - -1.0
234,578 - 0.4
234,579 - 0.1
234,600 - -1.2
234,600 - -1.0
234,600 - -1.6
234,600 - -2.8
234,605 + -0.9
234,610 - 1.2
234,616 - -1.7
234,617 + -1.0
234,621 - -0.6
234,625 - -4.2
234,736 - -2.0
234,739 - -2.3
234,741 + -2.1
234,772 - -2.4
234,880 - -1.1
234,913 + -1.3
235,036 - -1.8
235,053 - -1.8
235,072 + -0.4
235,174 + -2.6
235,467 - 16393 mRNA_8025 0.10 -2.0
235,484 + 16393 mRNA_8025 0.11 -2.8
235,498 + 16393 mRNA_8025 0.11 0.4
235,619 - 16393 mRNA_8025 0.14 -1.2
235,663 + 16393 mRNA_8025 0.15 -2.7
235,774 - 16393 mRNA_8025 0.18 -1.4
236,604 + 16393 mRNA_8025 0.37 -1.8
236,641 - 16393 mRNA_8025 0.38 -1.6
237,049 - 16393 mRNA_8025 0.48 -0.7
238,058 + 16393 mRNA_8025 0.72 -0.5
238,314 - 16393 mRNA_8025 0.78 -1.8
238,482 - 16393 mRNA_8025 0.82 -2.1
238,894 - -0.3
238,928 - -1.9
239,064 + 2.0
239,345 + -1.8
239,352 + 0.5
239,353 + -2.0
239,357 + -3.5
239,374 + -0.9
239,484 + -1.2
239,490 - -2.7
239,490 - -4.2
239,496 - -2.5
239,507 - -1.2
239,511 - -0.4
239,525 + -4.4
239,534 + -3.5
239,631 - -0.6
239,678 + -2.6
239,698 + -1.8
239,837 + -0.4
239,842 + -1.7
239,843 + 0.5
239,848 - -2.3
239,849 + -2.6
239,866 - -1.2
239,979 + 16394 mRNA_8026 0.10 -2.2
240,060 + 16394 mRNA_8026 0.12 -3.8
240,092 + 16394 mRNA_8026 0.13 -0.4
240,125 - 16394 mRNA_8026 0.14 1.0