Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8023

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8022: 16390 - BLAST Ubiquinone biosynthesis protein coq9, mitochondrial [..., at 229628 to 230640 16390 mRNA_8023: 16391 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 230764 to 233185 16391 mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233351 to 234544 16392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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230,602 + -1.6
230,605 - -1.2
230,888 - -0.7
230,926 + -1.5
231,153 - 16391 mRNA_8023 0.16 -2.2
231,197 - 16391 mRNA_8023 0.18 -1.2
231,311 + 16391 mRNA_8023 0.23 -2.3
231,654 - 16391 mRNA_8023 0.37 -0.8
231,899 - 16391 mRNA_8023 0.47 -2.4
232,210 - 16391 mRNA_8023 0.60 -4.0
232,505 - 16391 mRNA_8023 0.72 -0.5
232,512 - 16391 mRNA_8023 0.72 -1.9
232,533 + 16391 mRNA_8023 0.73 -0.7
232,543 - 16391 mRNA_8023 0.73 -0.5
232,616 - 16391 mRNA_8023 0.76 -0.4
232,651 + 16391 mRNA_8023 0.78 -2.8
232,778 - 16391 mRNA_8023 0.83 -2.3
232,790 + 16391 mRNA_8023 0.84 -1.7
232,813 + 16391 mRNA_8023 0.85 -2.0
232,980 + -0.7
232,993 + -1.1
233,073 - -0.5
233,093 + -3.4
233,236 + -1.2
233,241 + -0.0
233,244 + -1.2
233,249 + -2.1
233,250 + -1.2
233,251 - -2.9