Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8014

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213638 to 214851 16382 mRNA_8015: 16383 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 215153 to 216105 16383

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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212,750 - 16381 mRNA_8013 0.54 -1.9
213,429 - -0.6
213,537 - -0.5
213,573 - -1.4
213,580 - -0.7
213,585 + 0.8
213,636 - -0.6
213,643 - -1.5
213,649 - -1.7
213,651 + -1.6
213,651 + -0.9
213,757 - -3.1
213,766 + 16382 mRNA_8014 0.11 -1.9
213,777 - 16382 mRNA_8014 0.11 1.0
213,780 - 16382 mRNA_8014 0.12 -3.2
213,785 - 16382 mRNA_8014 0.12 -2.1
213,786 + 16382 mRNA_8014 0.12 -1.6
213,798 - 16382 mRNA_8014 0.13 -1.2
213,804 - 16382 mRNA_8014 0.14 -1.3
213,934 + 16382 mRNA_8014 0.24 -0.9
214,101 + 16382 mRNA_8014 0.38 -0.2
214,105 + 16382 mRNA_8014 0.38 -2.6
214,354 - 16382 mRNA_8014 0.59 -3.3
214,533 - 16382 mRNA_8014 0.74 0.1
214,791 - -1.6
214,796 + -3.3
214,944 + -0.8
215,235 - -0.8
215,263 - 16383 mRNA_8015 0.12 -0.7
215,308 - 16383 mRNA_8015 0.16 -2.7
215,312 - 16383 mRNA_8015 0.17 -0.2
215,491 + 16383 mRNA_8015 0.35 -1.9
215,519 - 16383 mRNA_8015 0.38 -2.9
215,539 + 16383 mRNA_8015 0.41 -0.7
215,540 - 16383 mRNA_8015 0.41 -1.0
215,548 - 16383 mRNA_8015 0.41 -2.1
215,548 + 16383 mRNA_8015 0.41 1.2
215,558 + 16383 mRNA_8015 0.42 -2.6
215,582 + 16383 mRNA_8015 0.45 0.3
215,598 - 16383 mRNA_8015 0.47 -1.9
215,620 - 16383 mRNA_8015 0.49 -3.6
215,661 + 16383 mRNA_8015 0.53 -1.4
215,667 - 16383 mRNA_8015 0.54 -2.0
215,671 - 16383 mRNA_8015 0.54 -2.3
215,686 + 16383 mRNA_8015 0.56 0.7
215,692 + 16383 mRNA_8015 0.57 -3.5
215,834 - 16383 mRNA_8015 0.71 -2.4