Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8012

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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208,904 - -0.5
208,955 + 2.1
208,958 - 1.1
208,965 - -1.1
208,969 - -2.8
209,011 - -0.1
209,162 + -1.0
209,168 + -1.2
209,438 + -0.6
209,588 + 16380 mRNA_8012 0.14 -1.2
209,596 + 16380 mRNA_8012 0.14 -2.0
209,856 + 16380 mRNA_8012 0.25 1.2
210,005 - 16380 mRNA_8012 0.31 -1.5
210,036 - 16380 mRNA_8012 0.33 -0.6
210,051 + 16380 mRNA_8012 0.33 -1.0
210,312 + 16380 mRNA_8012 0.44 -0.6
210,315 - 16380 mRNA_8012 0.45 -0.8
210,563 - 16380 mRNA_8012 0.55 -1.1
210,914 - 16380 mRNA_8012 0.70 0.6
210,922 - 16380 mRNA_8012 0.71 -0.3
210,922 - 16380 mRNA_8012 0.71 -1.3
211,043 - 16380 mRNA_8012 0.76 -4.8
211,199 + 16380 mRNA_8012 0.82 -3.1
211,228 + 16380 mRNA_8012 0.84 -3.1
211,761 - -0.5
211,775 - -1.6
211,777 - -1.2
211,780 + 0.7
211,783 - -0.8
211,785 - -1.4
211,788 + 0.2
211,790 - -3.7
211,840 - -0.4
211,965 - -1.9
211,978 - -2.3
211,981 + -1.5
211,982 + -1.5
211,997 - -2.7
212,002 - -1.3
212,122 - -2.6
212,128 - -2.6
212,154 + -0.8
212,181 + -0.8
212,198 - 16381 mRNA_8013 0.10 -1.8
212,294 - 16381 mRNA_8013 0.18 -0.7
212,444 + 16381 mRNA_8013 0.30 -3.1
212,577 + 16381 mRNA_8013 0.40 -1.6