Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8011

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206291 to 207434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379 mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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207,025 + 16378 mRNA_8010 0.64 0.5
207,296 - 16378 mRNA_8010 0.88 -1.7
207,492 - -1.3
207,505 + -0.5
207,506 + -2.2
207,645 - 0.6
207,651 + -0.7
208,100 - 16379 mRNA_8011 0.24 0.0
208,904 - -0.5
208,955 + 2.1
208,958 - 1.1
208,965 - -1.1
208,969 - -2.8
209,011 - -0.1
209,162 + -1.0
209,168 + -1.2
209,438 + -0.6
209,588 + 16380 mRNA_8012 0.14 -1.2
209,596 + 16380 mRNA_8012 0.14 -2.0
209,856 + 16380 mRNA_8012 0.25 1.2