Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8000

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7999: 16367 - K10994 RAD9A cell cycle checkpoint control protein RAD9A, at 177844 to 179868 16367 mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180086 to 183760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183994 to 185593 16369

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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179,762 - -1.1
179,880 - -1.2
180,114 - -0.4
180,169 - -2.7
180,226 + 0.5
180,384 - -0.3
180,549 + 16368 mRNA_8000 0.13 -1.7
180,724 + 16368 mRNA_8000 0.17 -2.8
180,757 + 16368 mRNA_8000 0.18 -1.3
180,858 - 16368 mRNA_8000 0.21 -2.3
180,948 + 16368 mRNA_8000 0.23 -0.8
181,003 - 16368 mRNA_8000 0.25 -0.4
181,106 - 16368 mRNA_8000 0.28 -1.2
181,289 + 16368 mRNA_8000 0.33 -1.7
181,417 - 16368 mRNA_8000 0.36 -0.5
181,436 + 16368 mRNA_8000 0.37 -1.8
181,754 - 16368 mRNA_8000 0.45 -1.7
182,022 + 16368 mRNA_8000 0.53 -3.0
182,052 - 16368 mRNA_8000 0.53 -3.4
182,088 - 16368 mRNA_8000 0.54 -1.5
182,159 + 16368 mRNA_8000 0.56 -2.2
182,455 + 16368 mRNA_8000 0.64 -1.3
182,501 - 16368 mRNA_8000 0.66 -1.9
182,787 + 16368 mRNA_8000 0.73 -0.7
183,029 - 16368 mRNA_8000 0.80 -3.9
183,068 + 16368 mRNA_8000 0.81 -2.3
183,072 - 16368 mRNA_8000 0.81 -2.7
183,453 + 0.2
183,668 + 0.3
183,933 - 0.1
183,934 + -0.6
184,078 - -0.2
184,215 - 16369 mRNA_8001 0.14 -1.3
184,251 + 16369 mRNA_8001 0.16 -2.2
184,256 - 16369 mRNA_8001 0.16 0.9
184,389 - 16369 mRNA_8001 0.25 -0.5
184,432 + 16369 mRNA_8001 0.27 -0.8
184,522 + 16369 mRNA_8001 0.33 -0.7