Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7988

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7987: 16355 - SUPERFAMILY--SSF144232, at 155023 to 156185 16355 mRNA_7988: 16356 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 156478 to 157308 16356 mRNA_7989: 16357 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 157953 to 158694 16357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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155,478 - 16355 mRNA_7987 0.39 -1.1
155,499 - 16355 mRNA_7987 0.41 -1.8
155,526 - 16355 mRNA_7987 0.43 -2.1
155,535 + 16355 mRNA_7987 0.44 -0.2
155,540 + 16355 mRNA_7987 0.44 -1.8
155,641 + 16355 mRNA_7987 0.53 -1.1
155,812 + 16355 mRNA_7987 0.68 0.6
155,825 + 16355 mRNA_7987 0.69 -1.3
155,833 + 16355 mRNA_7987 0.70 -1.9
155,838 - 16355 mRNA_7987 0.70 -1.8
155,974 + 16355 mRNA_7987 0.82 -1.3
155,996 - 16355 mRNA_7987 0.84 -1.1
156,106 - -2.2
156,110 + -0.1
156,116 - -1.6
156,162 + -0.7
156,186 + -0.7
156,255 + -0.5
156,259 + -0.8
156,278 + -1.2
156,280 + -1.6
156,281 - -1.7
156,282 + -0.3
156,293 + 0.7
156,294 + -0.3
156,312 + -1.9
156,420 - -3.4
156,683 - 16356 mRNA_7988 0.25 -0.7
156,712 + 16356 mRNA_7988 0.28 -1.7
156,723 - 16356 mRNA_7988 0.29 -2.9
156,803 + 16356 mRNA_7988 0.39 -1.6
156,850 - 16356 mRNA_7988 0.45 -3.2
157,027 + 16356 mRNA_7988 0.66 -0.2
157,027 + 16356 mRNA_7988 0.66 -1.5
157,302 + -2.4
157,413 - -1.3
157,439 + 0.6
157,441 - -1.2
157,863 + -1.3
158,048 + 16357 mRNA_7989 0.13 -1.2
158,202 - 16357 mRNA_7989 0.34 -1.5
158,204 + 16357 mRNA_7989 0.34 -1.4
158,281 + 16357 mRNA_7989 0.44 -1.5